RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PSMD14O00487 310 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 STK4Q13043 487 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 SLC35G1Q2M3R5 365 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 LRRC1Q9BTT6 524 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 TFCP2L1Q9NZI6 479 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 LGALS16A8MUM7 142 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 CCDC155Q8N6L0 562 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 DUSP9Q99956 384 aaKnown RBP23.5■■□□□ 1.35
CTCF-202ENST00000401394 RTL9Q8NET4 1388 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 KLRC4O43908 158 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 CCDC178Q5BJE1 867 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 ANKRD40Q6AI12 368 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 TMC4Q7Z404 712 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 ANKRD20A12PQ8NF67 263 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 CTCFLQ8NI51 663 aaPredicted RBP23.5■■□□□ 1.35
CTCF-202ENST00000401394 DYNLL2Q96FJ2 89 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 TUBGCP2Q9BSJ2 902 aa23.5■■□□□ 1.35
CTCF-202ENST00000401394 TOGARAM1Q9Y4F4 1720 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 DNAJC7Q99615 494 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 BCL9LQ86UU0 1499 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 MOCS3O95396 460 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 IGHMBP2P38935 993 aaKnown RBP23.49■■□□□ 1.35
CTCF-202ENST00000401394 TBC1D8BQ0IIM8 1120 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 NFRKBQ6P4R8 1299 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 BICDL1Q6ZP65 573 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 CSGALNACT2Q8N6G5 542 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 DISC1Q9NRI5 854 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 FAM170AA1A519 330 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 CCT5P48643 541 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 SND1Q7KZF4 910 aaKnown RBP eCLIP23.49■■□□□ 1.35
CTCF-202ENST00000401394 HAUS4Q9H6D7 363 aa23.49■■□□□ 1.35
CTCF-202ENST00000401394 FAM207AQ9NSI2 230 aaPredicted RBP23.49■■□□□ 1.35
CTCF-202ENST00000401394 NIP7Q9Y221 180 aaKnown RBP eCLIP23.49■■□□□ 1.35
CTCF-202ENST00000401394 SMARCC1Q92922 1105 aaPredicted RBP23.48■■□□□ 1.35
CTCF-202ENST00000401394 BTG4Q9NY30 223 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 SALL4Q9UJQ4 1053 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 SAMM50Q9Y512 469 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 USP17L8P0C7I0 530 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 PRDX5P30044 214 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 CAPN11Q9UMQ6 739 aa23.48■■□□□ 1.35
CTCF-202ENST00000401394 ZSCAN5CA6NGD5 496 aaPredicted RBP23.47■■□□□ 1.35
CTCF-202ENST00000401394 RNASE9P60153 205 aaKnown RBP23.47■■□□□ 1.35
CTCF-202ENST00000401394 USP17L3A6NCW0 530 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 USP17L4A6NCW7 530 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 KCTD16Q68DU8 428 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 TTI2Q6NXR4 508 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 CCNI2Q6ZMN8 369 aaPredicted RBP23.47■■□□□ 1.35
CTCF-202ENST00000401394 USP17L1Q7RTZ2 530 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 SLC44A5Q8NCS7 719 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 MS4A14Q96JA4 679 aa23.47■■□□□ 1.35
CTCF-202ENST00000401394 APBA1Q02410 837 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 CCDC96Q2M329 555 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 PAPD7Q5XG87 772 aaKnown RBP23.46■■□□□ 1.35
CTCF-202ENST00000401394 SH2D3CQ8N5H7 860 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 GBP3Q9H0R5 595 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 KANSL2Q9H9L4 492 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 ESYT3A0FGR9 886 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 TSPY2A6NKD2 308 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 H7C1D1 291 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 IVLP07476 585 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 RCSD1Q6JBY9 416 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 TSEN2Q8NCE0 465 aaKnown RBP23.46■■□□□ 1.35
CTCF-202ENST00000401394 TAF1P21675 1872 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 SPAG1Q07617 926 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 TSR1Q2NL82 804 aaKnown RBP23.46■■□□□ 1.35
CTCF-202ENST00000401394 GLIS3Q8NEA6 775 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 CRACR2AQ9BSW2 395 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 MYO1AQ9UBC5 1043 aa23.46■■□□□ 1.35
CTCF-202ENST00000401394 PTPROQ16827 1216 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 PFKFB3Q16875 520 aaPredicted RBP23.45■■□□□ 1.34
CTCF-202ENST00000401394 HEATR3Q7Z4Q2 680 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 BLIDQ8IZY5 108 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 PROCA1Q8NCQ7 364 aaPredicted RBP23.45■■□□□ 1.34
CTCF-202ENST00000401394 ARL8AQ96BM9 186 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 CNOT6LQ96LI5 555 aaKnown RBP23.45■■□□□ 1.34
CTCF-202ENST00000401394 SLC39A2Q9NP94 309 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 LIG3P49916 1009 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 TTYH3Q9C0H2 523 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 TSPYL1Q9H0U9 437 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 XIRP1Q702N8 1843 aaKnown RBP23.45■■□□□ 1.34
CTCF-202ENST00000401394 MYH13Q9UKX3 1938 aa23.45■■□□□ 1.34
CTCF-202ENST00000401394 BUB1O43683 1085 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 PLCG1P19174 1290 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 UBA7P41226 1012 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 MTIF2P46199 727 aaKnown RBP23.44■■□□□ 1.34
CTCF-202ENST00000401394 TRADDQ15628 312 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 DNAAF5Q86Y56 855 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 C2CD5Q86YS7 1000 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 GOLGA6L1Q8N7Z2 621 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 MED4Q9NPJ6 270 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 ANAPC4Q9UJX5 808 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 MYH10P35580 1976 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 CREG2Q8IUH2 290 aa23.44■■□□□ 1.34
CTCF-202ENST00000401394 PDS5AQ29RF7 1337 aaKnown RBP23.44■■□□□ 1.34
CTCF-202ENST00000401394 MECOMQ03112 1051 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 PDE4DQ08499 809 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 ENOX2Q16206 610 aaKnown RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 TXNRD1Q16881 649 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 MIIPQ5JXC2 388 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 DTHD1Q6ZMT9 781 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms