RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 COL1A1P02452 1464 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 DYNLL1P63167 89 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 ZBED6P86452 979 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 SF3B2Q13435 895 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 NOM1Q5C9Z4 860 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC122Q5T0U0 273 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CLEC4GQ6UXB4 293 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 NOA1Q8NC60 698 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 STAMQ92783 540 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 PURBQ96QR8 312 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CHP1Q99653 195 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CDCA7Q9BWT1 371 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 TTYH3Q9C0H2 523 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 KIAA1551Q9HCM1 1747 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 EXOC1Q9NV70 894 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 GUCA1BQ9UMX6 200 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 M0R2N6 131 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 KLRC4O43908 158 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 ABL1P00519 1130 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 PRLRP16471 622 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CDC25AP30304 524 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 UBA7P41226 1012 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CRKLP46109 303 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 HERVK_113P62684 666 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 ORC2Q13416 577 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC70Q6NSX1 233 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 TTI2Q6NXR4 508 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 WDR59Q6PJI9 974 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 FBXO33Q7Z6M2 555 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 KIAA1328Q86T90 577 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 SRLQ86TD4 932 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 FNBP4Q8N3X1 1017 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC102AQ96A19 550 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 JAKMIP2Q96AA8 810 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 NSUN4Q96CB9 384 aaKnown RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 LZTS2Q9BRK4 669 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 RASSF4Q9H2L5 321 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 DCP1AQ9NPI6 582 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 BTG4Q9NY30 223 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 NIP7Q9Y221 180 aaKnown RBP eCLIP11.2□□□□□ -0.62
COL17A1-203ENST00000393211 FAN1Q9Y2M0 1017 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 GDAQ9Y2T3 454 aa11.2□□□□□ -0.62
COL17A1-203ENST00000393211 DOT1LQ8TEK3 1739 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC194A0A1B0GVG4 234 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 ADAMTS2O95450 1211 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 CCNE1P24864 410 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 GYG1P46976 350 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 NAALADL2Q58DX5 795 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 NCAPH2Q6IBW4 605 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 ZNF572Q7Z3I7 529 aaPredicted RBP11.19□□□□□ -0.62
COL17A1-203ENST00000393211 ZSCAN29Q8IWY8 852 aaPredicted RBP11.19□□□□□ -0.62
COL17A1-203ENST00000393211 COG1Q8WTW3 980 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 FAM84BQ96KN1 310 aaPredicted RBP11.19□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM47Q96LD4 638 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 ERGIC2Q96RQ1 377 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 KAT14Q9H8E8 782 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 TCP11L1Q9NUJ3 509 aa11.19□□□□□ -0.62
COL17A1-203ENST00000393211 ABCB11O95342 1321 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 CYP2D7A0A087X1C5 515 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 LRRIQ3A6PVS8 624 aaPredicted RBP11.18□□□□□ -0.62
COL17A1-203ENST00000393211 MYO1CO00159 1063 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 HNRNPH3P31942 346 aaKnown RBP11.18□□□□□ -0.62
COL17A1-203ENST00000393211 GYS2P54840 703 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 AMPD3Q01432 767 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 GRM4Q14833 912 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 RCSD1Q6JBY9 416 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 ARHGAP27Q6ZUM4 889 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 P2RX5Q93086 422 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 C7orf25Q9BPX7 421 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 TUBGCP2Q9BSJ2 902 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 PODXL2Q9NZ53 605 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 HPCAL4Q9UM19 191 aa11.18□□□□□ -0.62
COL17A1-203ENST00000393211 RRP15Q9Y3B9 282 aaKnown RBP11.18□□□□□ -0.62
COL17A1-203ENST00000393211 TSPY2A6NKD2 308 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 N4BP1O75113 896 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ATP1A1P05023 1023 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 VAV2P52735 878 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 TBC1D8BQ0IIM8 1120 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 KIF5AQ12840 1032 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 SLC10A5Q5PT55 438 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 SPTY2D1Q68D10 685 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 FOXR2Q6PJQ5 311 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 AMOTL1Q8IY63 956 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 MMGT1Q8N4V1 131 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 CSGALNACT2Q8N6G5 542 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM58Q8NG06 486 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 AFAP1L1Q8TED9 768 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ZNF384Q8TF68 577 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 MMS19Q96T76 1030 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 DUSP9Q99956 384 aaKnown RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 NHEJ1Q9H9Q4 299 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 SUGCTQ9HAC7 445 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 MINPP1Q9UNW1 487 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 CCDC88AQ3V6T2 1871 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ZNF831Q5JPB2 1677 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 ROBO3Q96MS0 1386 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 TRIM49BA6NDI0 452 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 NUTM2BA6NNL0 878 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-203ENST00000393211 A6NNZ2 444 aa11.17□□□□□ -0.62
COL17A1-203ENST00000393211 NUTM2EB1AL46 878 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms