RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 URI1O94763 535 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 RBM5P52756 815 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 TBX2Q13207 712 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 NR1I3Q14994 352 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 DOK7Q18PE1 504 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 C15orf52Q6ZUT6 534 aaKnown RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 TMC4Q7Z404 712 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 FAM177A1Q8N128 213 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 ZNF397Q8NF99 534 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 EYA3Q99504 573 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 SEC63Q9UGP8 760 aaKnown RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 V9GYY5 206 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 PHLPP2Q6ZVD8 1323 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 COL24A1Q17RW2 1714 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 LAMB1P07942 1786 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 DLEC1Q9Y238 1755 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 A0A1B0GTH6 734 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 NPR1P16066 1061 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 PICALMQ13492 652 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 STIM1Q13586 685 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 NAA30Q147X3 362 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 SMYD4Q8IYR2 804 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 PROM2Q8N271 834 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 IGSF22Q8N9C0 903 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 SLC44A5Q8NCS7 719 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 TMEM47Q9BQJ4 181 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 SRRTQ9BXP5 876 aaKnown RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 MKRN1Q9UHC7 482 aaKnown RBP10.86□□□□□ -0.67
COL6A3-204ENST00000392003 SUFUQ9UMX1 484 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 CASZ1Q86V15 1759 aa10.86□□□□□ -0.67
COL6A3-204ENST00000392003 KLRF2D3W0D1 207 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 PARP1P09874 1014 aaKnown RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 NAPAP54920 295 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 GABPB1Q06547 395 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 PAK1Q13153 545 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CRY2Q49AN0 593 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 RASGRP4Q8TDF6 673 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 POLLQ9UGP5 575 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 ROBO3Q96MS0 1386 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 IRS2Q9Y4H2 1338 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 N4BP3O15049 544 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 VEGFAP15692 232 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CASQ1P31415 396 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CUL4BQ13620 913 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CPLX3Q8WVH0 158 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 RRP36Q96EU6 259 aaKnown RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 C6orf50Q9HD87 102 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 MAD2L2Q9UI95 211 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 RPN1P04843 607 aaKnown RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CD44P16070 742 aaKnown RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 RASA1P20936 1047 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 GNA11P29992 359 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 CDK8P49336 464 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 GNG11P61952 73 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 SF3B2Q13435 895 aaKnown RBP10.85□□□□□ -0.67
COL6A3-204ENST00000392003 WWC2Q6AWC2 1192 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 KRT25Q7Z3Z0 450 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 C2CD5Q86YS7 1000 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 SP8Q8IXZ3 490 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 TC2NQ8N9U0 490 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 L2HGDHQ9H9P8 463 aa10.85□□□□□ -0.67
COL6A3-204ENST00000392003 PPP1R3GB7ZBB8 358 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 H0YIN7 160 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 LAD1O00515 517 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 INF2Q27J81 1249 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 ZNF658Q5TYW1 1059 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-204ENST00000392003 NAA15Q9BXJ9 866 aaKnown RBP10.84□□□□□ -0.67
COL6A3-204ENST00000392003 RTFDC1Q9BY42 306 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-204ENST00000392003 BARHL2Q9NY43 387 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 RWDD2AQ9UIY3 292 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 CCDC175P0C221 793 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 HOXA10P31260 410 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-204ENST00000392003 KARSQ15046 597 aaKnown RBP10.84□□□□□ -0.67
COL6A3-204ENST00000392003 ELF2Q15723 593 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 E2F4Q16254 413 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 GRIK5Q16478 980 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 PDXDC2PQ6P474 469 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 REXO1L1PQ8IX06 675 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 C10orf67Q8IYJ2 551 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 DAGLBQ8NCG7 672 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 UBXN4Q92575 508 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 PANX2Q96RD6 677 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 TSPYL1Q9H0U9 437 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 ATP6V0A2Q9Y487 856 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 FAM205AQ6ZU69 1335 aa10.84□□□□□ -0.67
COL6A3-204ENST00000392003 GPR75-ASB3A0A0A6YYF3 556 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 PALM3A6NDB9 673 aaPredicted RBP10.83□□□□□ -0.67
COL6A3-204ENST00000392003 PLSCR1O15162 318 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 GOLGA8HP0CJ92 632 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 NONOQ15233 471 aaKnown RBP eCLIP10.83□□□□□ -0.67
COL6A3-204ENST00000392003 CNGA4Q8IV77 575 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 NEDD1Q8NHV4 660 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 NELFBQ8WX92 580 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 MED15Q96RN5 788 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 SPZ1Q9BXG8 430 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 STK32BQ9NY57 414 aa10.83□□□□□ -0.67
COL6A3-204ENST00000392003 ADD3Q9UEY8 706 aaKnown RBP10.83□□□□□ -0.67
COL6A3-204ENST00000392003 PCDHA6Q9UN73 950 aa10.83□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms