RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 SPATS2Q86XZ4 545 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 GSDMAQ96QA5 445 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 MMTAG2Q9BU76 263 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 STMN3Q9NZ72 180 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 PIK3R4Q99570 1358 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 H7C0C1 242 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 THAP12O43422 761 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 GCNT3O95395 438 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 ATP5OP48047 213 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 DNM1Q05193 864 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 TMTC3Q6ZXV5 915 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 SPATS2LQ9NUQ6 558 aaKnown RBP11.61□□□□□ -0.55
RTN3-206ENST00000377819 PCDHB13Q9Y5F0 798 aa11.61□□□□□ -0.55
RTN3-206ENST00000377819 TMEM191BP0C7N4 346 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 TBC1D9Q6ZT07 1266 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 MCF2L2Q86YR7 1114 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 POLE3Q9NRF9 147 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 ATP10BO94823 1461 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 TTI1O43156 1089 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 TRPA1O75762 1119 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 RLBP1P12271 317 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 TMEM259Q4ZIN3 620 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 TTC23LQ6PF05 361 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 MIGA1Q8NAN2 632 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 ABTB1Q969K4 478 aaPredicted RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 FAM149B1Q96BN6 582 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 OTUB1Q96FW1 271 aaPredicted RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 ZBTB18Q99592 522 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 MRPL44Q9H9J2 332 aaKnown RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 C1orf112Q9NSG2 853 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 SUN2Q9UH99 717 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 SERPINB2P05120 415 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 NEK2P51955 445 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 ZYXQ15942 572 aaKnown RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 VPS39Q96JC1 886 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 SYTL2Q9HCH5 934 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 UBXN8O00124 270 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 DDX39AO00148 427 aaKnown RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 ELF1P32519 619 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 RECQLP46063 649 aaPredicted RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 DEUP1Q05D60 604 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 DHX32Q7L7V1 743 aaKnown RBP11.6□□□□□ -0.55
RTN3-206ENST00000377819 CADPS2Q86UW7 1296 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 MLKLQ8NB16 471 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 MOSPD1Q9UJG1 213 aa11.6□□□□□ -0.55
RTN3-206ENST00000377819 VWDEQ8N2E2 1590 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 CFBP00751 764 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 CLTAP09496 248 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 PAK1Q13153 545 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 KRT25Q7Z3Z0 450 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 SZRD1Q7Z422 152 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 SATB2Q9UPW6 733 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 H3BRJ5 948 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 PYGBP11216 843 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 HDDC2Q7Z4H3 204 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 TADA2BQ86TJ2 420 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 TRIM59Q8IWR1 403 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 LARGE2Q8N3Y3 721 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 DNAAF3Q8N9W5 541 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 LRRC37BQ96QE4 947 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 PAG1Q9NWQ8 432 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 TRPC5Q9UL62 973 aaPredicted RBP11.59□□□□□ -0.55
RTN3-206ENST00000377819 SUN1O94901 812 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 PMS1P54277 932 aaKnown RBP11.59□□□□□ -0.55
RTN3-206ENST00000377819 OCRLQ01968 901 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 SLFN5Q08AF3 891 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 RUNDC3BQ96NL0 473 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 PSMB7Q99436 277 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 STK32BQ9NY57 414 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 HYOU1Q9Y4L1 999 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 ALDH1L1O75891 902 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 TMCC1O94876 653 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 DDB1Q16531 1140 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 TAGAPQ8N103 731 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 SNX19Q92543 992 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 ABHD8Q96I13 439 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 STX18Q9P2W9 335 aaKnown RBP11.59□□□□□ -0.55
RTN3-206ENST00000377819 DENND2AQ9ULE3 1009 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 LRFN2Q9ULH4 789 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 CTNND2Q9UQB3 1225 aa11.59□□□□□ -0.55
RTN3-206ENST00000377819 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.58□□□□□ -0.561e-77■■□□□ 12.1
RTN3-206ENST00000377819 SYNDIG1LA6NDD5 238 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 ZNF233A6NK53 670 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 H7C1D1 291 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 LIG4P49917 911 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 THOC5Q13769 683 aaKnown RBP11.58□□□□□ -0.56
RTN3-206ENST00000377819 TRIML2Q8N7C3 387 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 CHURC1Q8WUH1 139 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 GCNAQ96QF7 691 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 CARD6Q9BX69 1037 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 USP26Q9BXU7 913 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 NT5C3AQ9H0P0 336 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 WARS2Q9UGM6 360 aaKnown RBP11.58□□□□□ -0.56
RTN3-206ENST00000377819 HFM1A2PYH4 1435 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 N4BP1O75113 896 aaKnown RBP11.58□□□□□ -0.56
RTN3-206ENST00000377819 DEXIO95424 95 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 ESRRBO95718 433 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 CLCN1P35523 988 aa11.58□□□□□ -0.56
RTN3-206ENST00000377819 PCYT1AP49585 367 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms