RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 MTBPQ96DY7 904 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 ATP6V0A4Q9HBG4 840 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 PCDHB13Q9Y5F0 798 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 ABCB4P21439 1286 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 MRPS15P82914 257 aaKnown RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 NBPF9Q3BBW0 867 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 OR8K1Q8NGG5 319 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 POLKQ9UBT6 870 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 MID2Q9UJV3 735 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 SGK1O00141 431 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 ADCY7P51828 1080 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 SPOUT1Q5T280 376 aaKnown RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 PODNQ7Z5L7 613 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 SFMBT1Q9UHJ3 866 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 TRPC5Q9UL62 973 aaPredicted RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 PPARGP37231 505 aaPredicted RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 LSM14BQ9BX40 385 aaKnown RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 CBX8Q9HC52 389 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 KCNJ18B7U540 433 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 KDM1AO60341 852 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 EPHB4P54760 987 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 PPARDQ03181 441 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 KCNJ12Q14500 433 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 OPTNQ96CV9 577 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 SPAG7O75391 227 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 WBP4O75554 376 aaKnown RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 DMP1Q13316 513 aaPredicted RBP12.66□□□□□ -0.38
VPS13A-205ENST00000376636 RABGGTAQ92696 567 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 PGBD1Q96JS3 809 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 OLFM3Q96PB7 478 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 CLEC11AQ9Y240 323 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 CPP00450 1065 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 COG4Q9H9E3 785 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 GINS2Q9Y248 185 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 JRKLQ9Y4A0 524 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 MAST3O60307 1309 aa12.66□□□□□ -0.38
VPS13A-205ENST00000376636 KIAA2013Q8IYS2 634 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 NAF1Q96HR8 494 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ARHGAP10A1A4S6 786 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ENOX1Q8TC92 643 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 U2AF1L4Q8WU68 220 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ARHGAP26Q9UNA1 814 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ZNF445P59923 1031 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 WAPLQ7Z5K2 1190 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 USHBP1Q8N6Y0 703 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 CHCHD3Q9NX63 227 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 PPP1R12AO14974 1030 aaPredicted RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ZC3H12BQ5HYM0 836 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 KHDRBS2Q5VWX1 349 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 KRT87PA6NCN2 255 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 KIF1CO43896 1103 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 TNNC2P02585 160 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 FAM133BQ5BKY9 247 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 PARD3BQ8TEW8 1205 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 USP26Q9BXU7 913 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 PDE11AQ9HCR9 933 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ZSCAN32Q9NX65 697 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ATP5HO75947 161 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ACTN1P12814 892 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 MSH2P43246 934 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 LONRF3Q496Y0 759 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 TEX9Q8N6V9 391 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 DENND2AQ9ULE3 1009 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 MCF2LO15068 1137 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 MAPK13O15264 365 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 PUM3Q15397 648 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 TEDDM1Q5T9Z0 273 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 NBPF10Q6P3W6 841 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 WARS2Q9UGM6 360 aaKnown RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
VPS13A-205ENST00000376636 HSPA6P17066 643 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 MCTP2Q6DN12 878 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 BCL2L12Q9HB09 334 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 TAB2Q9NYJ8 693 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 PTPN22Q9Y2R2 807 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 SNX5Q9Y5X3 404 aa12.65□□□□□ -0.38
VPS13A-205ENST00000376636 XPAP23025 273 aaPredicted RBP12.65□□□□□ -0.39
VPS13A-205ENST00000376636 GRM1Q13255 1194 aa12.65□□□□□ -0.39
VPS13A-205ENST00000376636 HESX1Q9UBX0 185 aa12.65□□□□□ -0.39
VPS13A-205ENST00000376636 TRIM33Q9UPN9 1127 aa12.65□□□□□ -0.39
VPS13A-205ENST00000376636 DMTNQ08495 405 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 HAUS4Q9H6D7 363 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 LRWD1Q9UFC0 647 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 ZNF148Q9UQR1 794 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 PTPREP23469 700 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 TTBK2Q6IQ55 1244 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 SESTD1Q86VW0 696 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 SAAL1Q96ER3 474 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 TRIM45Q9H8W5 580 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 TROQ12816 1431 aaPredicted RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 TMEM259Q4ZIN3 620 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 NOP53Q9NZM5 478 aaKnown RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 TXKP42681 527 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 PSMD7P51665 324 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 GRAMD1BQ3KR37 738 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 SCYL2Q6P3W7 929 aa12.64□□□□□ -0.39
VPS13A-205ENST00000376636 PATL1Q86TB9 770 aaKnown RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 REXO1Q8N1G1 1221 aaKnown RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 SCAF11Q99590 1463 aaKnown RBP12.64□□□□□ -0.39
VPS13A-205ENST00000376636 A0A087WUV0 522 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms