RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CAB39Q9Y376 341 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SETD1BQ9UPS6 1966 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 HSPA8P11142 646 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 NAPAP54920 295 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 SNAP25P60880 206 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 YWHAHQ04917 246 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ADCY1Q08828 1119 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 MXD4Q14582 209 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 MUM1Q2TAK8 710 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 THEMIS2Q5TEJ8 643 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CNNM4Q6P4Q7 775 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PDCD10Q9BUL8 212 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM36Q9NQ86 728 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 IARS2Q9NSE4 1012 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 F8W8V4 182 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 OSBPP22059 807 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PMLP29590 882 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 NSUN2Q08J23 767 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 LRMPQ12912 555 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CUL1Q13616 776 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 SHROOM1Q2M3G4 852 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TMEM67Q5HYA8 995 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 BARGINQ6ZT62 677 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 VN1R5Q7Z5H4 357 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ZNF227Q86WZ6 799 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 COMMD2Q86X83 199 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 WDR75Q8IWA0 830 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 C10orf53Q8N6V4 93 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PBXIP1Q96AQ6 731 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 IQCDQ96DY2 449 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 NAF1Q96HR8 494 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 RNPEPQ9H4A4 650 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DDX56Q9NY93 547 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CAPN11Q9UMQ6 739 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 SPDYE5A6NIY4 337 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 IGBP1P78318 339 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 MYBPC2Q14324 1141 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ARL13BQ3SXY8 428 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DENND2CQ68D51 928 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 C11orf74Q86VG3 221 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 BBS5Q8N3I7 341 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PRKD2Q9BZL6 878 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 USE1Q9NZ43 259 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 RRBP1Q9P2E9 1410 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DIDO1Q9BTC0 2240 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 GOLGA8IPA6NC78 632 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TRPA1O75762 1119 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 FYNP06241 537 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 LDHCP07864 332 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 P4HA1P13674 534 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ASIC1P78348 528 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 LAMC2Q13753 1193 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DEPDC1Q5TB30 811 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TTC19Q6DKK2 380 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 FERMT3Q86UX7 667 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PIP4K2CQ8TBX8 421 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 C8orf37Q96NL8 207 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 FAM129BQ96TA1 746 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 KRT12Q99456 494 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ZKSCAN3Q9BRR0 538 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 RNF41Q9H4P4 317 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PLEKHA5Q9HAU0 1116 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DIABLOQ9NR28 239 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 EPS15L1Q9UBC2 864 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 FHOD3Q2V2M9 1422 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 WDR64B1ANS9 1081 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 FLOT1O75955 427 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CD2BP2O95400 341 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 SMARCA1P28370 1054 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 PSMC6P62333 389 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 GSTO1P78417 241 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TRAF1Q13077 416 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CAMK1Q14012 370 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 OTUD7BQ6GQQ9 843 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 HORMAD1Q86X24 394 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 STX12Q86Y82 276 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 SLC26A7Q8TE54 656 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 EXT2Q93063 718 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 TACO1Q9BSH4 297 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 MBIPQ9NS73 344 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 STOML2Q9UJZ1 356 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ANP32DO95626 131 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 HSD3B1P14060 373 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CPA3P15088 417 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 KRT4P19013 534 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 HADHAP40939 763 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 MKRN3Q13064 507 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 DDX53Q86TM3 631 aaKnown RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ADCK1Q86TW2 530 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 IQCF2Q8IXL9 164 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 IPCEF1Q8WWN9 437 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 OTUB1Q96FW1 271 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-202ENST00000375405 RASSF4Q9H2L5 321 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 CTNNAL1Q9UBT7 734 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 ZNF212Q9UDV6 495 aa5.06□□□□□ -1.6
SCN1A-202ENST00000375405 THAP12O43422 761 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 KRT6AP02538 564 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 KRT6BP04259 564 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CYP19A1P11511 503 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 GRK2P25098 689 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms