RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CEP135Q66GS9 1140 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 LMBR1LQ6UX01 489 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 ADAMTSL4Q6UY14 1074 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 FMR1NBQ8N0W7 255 aaPredicted RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 SPACA7Q96KW9 195 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 UTP14AQ9BVJ6 771 aaKnown RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 PLA2G12BQ9BX93 195 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 NIF3L1Q9GZT8 377 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 RBSNQ9H1K0 784 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 TFCP2L1Q9NZI6 479 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 POLIQ9UNA4 740 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 PA2G4Q9UQ80 394 aaKnown RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 EXOC6BQ9Y2D4 811 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 ZNF652Q9Y2D9 606 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 TMA7Q9Y2S6 64 aaKnown RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 C4AP0C0L4 1744 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 PNPLA7Q6ZV29 1317 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 CDHR2Q9BYE9 1310 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 SCN7AQ01118 1682 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 IRS4O14654 1257 aaPredicted RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 HMMRO75330 724 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 DEAF1O75398 565 aaPredicted RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 TRPA1O75762 1119 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 CSF1RP07333 972 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 HCLS1P14317 486 aaPredicted RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 ACPPP15309 386 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 TM4SF1P30408 202 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 SOX18P35713 384 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 NFIXQ14938 502 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 PARP10Q53GL7 1025 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 SDE2Q6IQ49 451 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 C1orf127Q8N9H9 656 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 TTC16Q8NEE8 873 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 GCC1Q96CN9 775 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 RASSF4Q9H2L5 321 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 HDAC5Q9UQL6 1122 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 TUBGCP6Q96RT7 1819 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 ADAM23O75077 832 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 SURF6O75683 361 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 HMGB2P26583 209 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 HYAL2Q12891 473 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 TCEAL1Q15170 157 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 ENOX2Q16206 610 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 SLC15A2Q16348 729 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 ANKRD45Q5TZF3 282 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 C16orf71Q8IYS4 520 aaPredicted RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 TTLL11Q8NHH1 800 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 KLHDC4Q8TBB5 520 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 DMRTB1Q96MA1 342 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 CITED4Q96RK1 184 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 ZSWIM4Q9H7M6 989 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 DDX41Q9UJV9 622 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 NOP58Q9Y2X3 529 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 SH3TC1Q8TE82 1336 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 PNMA6FA0A0J9YX94 578 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 RAB11FIP3O75154 756 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 PTPN12Q05209 780 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 DDR1Q08345 913 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 SLC10A5Q5PT55 438 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 JAZF1Q86VZ6 243 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 CHD1LQ86WJ1 897 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 ALKBH8Q96BT7 664 aaKnown RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 PDGFDQ9GZP0 370 aaPredicted RBP4.36□□□□□ -1.71
MCF2-202ENST00000370573 TPSG1Q9NRR2 321 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 STK32BQ9NY57 414 aa4.36□□□□□ -1.71
MCF2-202ENST00000370573 ABCC12Q96J65 1359 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 K7ELQ4 463 aaPredicted RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 MARCH6O60337 910 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 PDE8AO60658 829 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 SASH1O94885 1247 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 PCSK2P16519 638 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 CES1P23141 567 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 MZF1P28698 734 aaPredicted RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 RGS3P49796 1198 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 CTSWP56202 376 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 MBTPS1Q14703 1052 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 PDE12Q6L8Q7 609 aaKnown RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 ILDR2Q71H61 639 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 NBPF5PQ86XG9 351 aaPredicted RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 MCF2L2Q86YR7 1114 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 FLAD1Q8NFF5 587 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 OTUD7AQ8TE49 926 aaPredicted RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 NACC1Q96RE7 527 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 PUS3Q9BZE2 481 aaKnown RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 SEMA6BQ9H3T3 888 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 GREM2Q9H772 168 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 SRA1Q9HD15 236 aaKnown RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 COPRSQ9NQ92 184 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 COL24A1Q17RW2 1714 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 LINC01387J3KSC0 135 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 POLRMTO00411 1230 aaKnown RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 SERPINB2P05120 415 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 PRR5LQ6MZQ0 368 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 ATG9AQ7Z3C6 839 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 TTC9Q92623 222 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 ARMC5Q96C12 935 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 SIL1Q9H173 461 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 SH2B1Q9NRF2 756 aaPredicted RBP4.35□□□□□ -1.71
MCF2-202ENST00000370573 INPP5FQ9Y2H2 1132 aa4.35□□□□□ -1.71
MCF2-202ENST00000370573 DDX60Q8IY21 1712 aaKnown RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms