RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CTDP1Q9Y5B0 961 aaPredicted RBP25.7■■□□□ 1.71
SDC3-202ENST00000339394 V9GY48 417 aaPredicted RBP25.7■■□□□ 1.71
SDC3-202ENST00000339394 ZNF536O15090 1300 aa25.7■■□□□ 1.7
SDC3-202ENST00000339394 hCG_1642624A0A1W2PR95 340 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 K7ELQ4 463 aaPredicted RBP25.69■■□□□ 1.7
SDC3-202ENST00000339394 ZBTB5O15062 677 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 Q3C1V9 767 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 CCDC174Q6PII3 467 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 CPXCR1Q8N123 301 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 RRP36Q96EU6 259 aaKnown RBP25.69■■□□□ 1.7
SDC3-202ENST00000339394 WBP1LQ9NX94 342 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 RLFQ13129 1914 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 DTNBO60941 627 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 CDKL5O76039 1030 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 QRICH1Q2TAL8 776 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 HSCBQ8IWL3 235 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 BEGAINQ9BUH8 593 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 RAVER2Q9HCJ3 691 aaKnown RBP25.69■■□□□ 1.7
SDC3-202ENST00000339394 SAGE1Q9NXZ1 904 aa25.69■■□□□ 1.7
SDC3-202ENST00000339394 PNMA6FA0A0J9YX94 578 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 ATP2A1O14983 1001 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 BCRP11274 1271 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 ERVK-9P63128 1117 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 ERVK-24P63145 666 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 PLS1Q14651 629 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 GPRC5AQ8NFJ5 357 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 SLC26A6Q9BXS9 759 aa25.68■■□□□ 1.7
SDC3-202ENST00000339394 PRPF3O43395 683 aaKnown RBP25.67■■□□□ 1.7
SDC3-202ENST00000339394 ICAM1P05362 532 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 OAZ1P54368 228 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 FAM110CQ1W6H9 321 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 JMYQ8N9B5 988 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 NSUN7Q8NE18 718 aaKnown RBP25.67■■□□□ 1.7
SDC3-202ENST00000339394 AGBL1Q96MI9 1066 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 RNF26Q9BY78 433 aaPredicted RBP25.67■■□□□ 1.7
SDC3-202ENST00000339394 SPATC1LQ9H0A9 340 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 MORF4L1Q9UBU8 362 aa25.67■■□□□ 1.7
SDC3-202ENST00000339394 SEC63Q9UGP8 760 aaKnown RBP25.67■■□□□ 1.7
SDC3-202ENST00000339394 PPP1R11O60927 126 aaPredicted RBP25.66■■□□□ 1.7
SDC3-202ENST00000339394 STAT3P40763 770 aa25.66■■□□□ 1.7
SDC3-202ENST00000339394 SSRP1Q08945 709 aaKnown RBP25.66■■□□□ 1.7
SDC3-202ENST00000339394 TEX13BQ9BXU2 312 aa25.66■■□□□ 1.7
SDC3-202ENST00000339394 TSHZ2Q9NRE2 1034 aa25.66■■□□□ 1.7
SDC3-202ENST00000339394 FMNL1O95466 1100 aaPredicted RBP25.65■■□□□ 1.7
SDC3-202ENST00000339394 SNRNP48Q6IEG0 339 aaKnown RBP25.65■■□□□ 1.7
SDC3-202ENST00000339394 TRIM22Q8IYM9 498 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 LLPHQ9BRT6 129 aaKnown RBP25.65■■□□□ 1.7
SDC3-202ENST00000339394 JAK2O60674 1132 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 AKAP17AQ02040 695 aaKnown RBP25.65■■□□□ 1.7
SDC3-202ENST00000339394 CUL4AQ13619 759 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 AMNQ9BXJ7 453 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 MOV10L1Q9BXT6 1211 aaKnown RBP25.65■■□□□ 1.7
SDC3-202ENST00000339394 CCPG1Q9ULG6 757 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 RIPK3Q9Y572 518 aa25.65■■□□□ 1.7
SDC3-202ENST00000339394 PTPDC1A2A3K4 754 aa25.64■■□□□ 1.69
SDC3-202ENST00000339394 TAL1P17542 331 aaPredicted RBP25.64■■□□□ 1.69
SDC3-202ENST00000339394 SLC4A3P48751 1232 aa25.64■■□□□ 1.69
SDC3-202ENST00000339394 PKN1Q16512 942 aa25.64■■□□□ 1.69
SDC3-202ENST00000339394 FBXO11Q86XK2 927 aa25.64■■□□□ 1.69
SDC3-202ENST00000339394 RBM27Q9P2N5 1060 aaKnown RBP25.64■■□□□ 1.69
SDC3-202ENST00000339394 PARP14Q460N5 1801 aa25.64■■□□□ 1.69
SDC3-202ENST00000339394 USH1GQ495M9 461 aa25.63■■□□□ 1.69
SDC3-202ENST00000339394 RIOX2Q8IUF8 465 aa25.63■■□□□ 1.69
SDC3-202ENST00000339394 SMARCC2Q8TAQ2 1214 aa25.63■■□□□ 1.69
SDC3-202ENST00000339394 PCDHA1Q9Y5I3 950 aa25.63■■□□□ 1.69
SDC3-202ENST00000339394 FDPSP14324 419 aaKnown RBP25.62■■□□□ 1.69
SDC3-202ENST00000339394 CCNA1P78396 465 aa25.62■■□□□ 1.69
SDC3-202ENST00000339394 PFKFB3Q16875 520 aaPredicted RBP25.62■■□□□ 1.69
SDC3-202ENST00000339394 DDX11Q96FC9 970 aa25.62■■□□□ 1.69
SDC3-202ENST00000339394 PNMA2Q9UL42 364 aa25.62■■□□□ 1.69
SDC3-202ENST00000339394 DEXIO95424 95 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 SCG2P13521 617 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 COA7Q96BR5 231 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 PORCNQ9H237 461 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 ORC3Q9UBD5 711 aaPredicted RBP25.61■■□□□ 1.69
SDC3-202ENST00000339394 TSKSQ9UJT2 592 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 STK36Q9NRP7 1315 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 BAZ2BQ9UIF8 2168 aaKnown RBP25.61■■□□□ 1.69
SDC3-202ENST00000339394 A0A0G2JMZ2 1700 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 SLC25A27O95847 323 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 ALAS1P13196 640 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 ERCC3P19447 782 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 HEATR3Q7Z4Q2 680 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 GPKOWQ92917 476 aaPredicted RBP eCLIP25.61■■□□□ 1.69
SDC3-202ENST00000339394 HOMER2Q9NSB8 354 aa25.61■■□□□ 1.69
SDC3-202ENST00000339394 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.61■■□□□ 1.69
SDC3-202ENST00000339394 GPR25O00155 361 aa25.6■■□□□ 1.69
SDC3-202ENST00000339394 WWC2Q6AWC2 1192 aa25.6■■□□□ 1.69
SDC3-202ENST00000339394 NCAPG2Q86XI2 1143 aa25.6■■□□□ 1.69
SDC3-202ENST00000339394 TRERF1Q96PN7 1200 aa25.6■■□□□ 1.69
SDC3-202ENST00000339394 EFCC1Q9HA90 598 aa25.6■■□□□ 1.69
SDC3-202ENST00000339394 RBM19Q9Y4C8 960 aaKnown RBP25.6■■□□□ 1.69
SDC3-202ENST00000339394 HMGN5P82970 282 aaKnown RBP25.59■■□□□ 1.69
SDC3-202ENST00000339394 SP3Q02447 781 aa25.59■■□□□ 1.69
SDC3-202ENST00000339394 TRAF1Q13077 416 aa25.59■■□□□ 1.69
SDC3-202ENST00000339394 BECN1Q14457 450 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 TKFCQ3LXA3 575 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 CCAR1Q8IX12 1150 aaKnown RBP25.58■■□□□ 1.69
SDC3-202ENST00000339394 SHCBP1Q8NEM2 672 aa25.58■■□□□ 1.69
SDC3-202ENST00000339394 INTS4Q96HW7 963 aaKnown RBP25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms