RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 GAS8O95995 478 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 HDXQ7Z353 690 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 ANKS4BQ8N8V4 417 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 RAB3IL1Q8TBN0 382 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 ODF2LQ9ULJ1 636 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 RPN1P04843 607 aaKnown RBP11.24□□□□□ -0.61
CHD3-201ENST00000330494 EP400NLQ6ZTU2 488 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 FANCLQ9NW38 375 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 KIAA1024Q9UPX6 916 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 KDM3AQ9Y4C1 1321 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 SEPT9Q9UHD8 586 aaPredicted RBP11.24□□□□□ -0.61
CHD3-201ENST00000330494 CLTCL1P53675 1640 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 MAP3K4Q9Y6R4 1608 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 ZNF445P59923 1031 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 CFAP157Q5JU67 520 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 SCYL2Q6P3W7 929 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 FLAD1Q8NFF5 587 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 IFIH1Q9BYX4 1025 aaKnown RBP11.24□□□□□ -0.61
CHD3-201ENST00000330494 SPHKAPQ2M3C7 1700 aa11.24□□□□□ -0.61
CHD3-201ENST00000330494 MECOMQ03112 1051 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 GNPTABQ3T906 1256 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 PEX26Q7Z412 305 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 SEPT12Q8IYM1 358 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 NT5C3AQ9H0P0 336 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 XRCC5P13010 732 aaKnown RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 POLGP54098 1239 aaPredicted RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 AIFM3Q96NN9 605 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 AATKQ6ZMQ8 1374 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 CARMIL3Q8ND23 1372 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 QRICH2Q9H0J4 1663 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 CIAO1O76071 339 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 YARSP54577 528 aaKnown RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 UBE2SQ16763 222 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 SIRT2Q8IXJ6 389 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 FAM178BQ8IXR5 827 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 FAM76AQ8TAV0 307 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 GJA10Q969M2 543 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 OGFRQ9NZT2 677 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 SYNJ2BP-COX16A0A087WUM0 186 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 NR5A1Q13285 461 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 LRRC41Q15345 812 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 TSC1Q92574 1164 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 MAP4K1Q92918 833 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 PIH1D3Q9NQM4 214 aaKnown RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 COX16Q9P0S2 106 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 AXIN2Q9Y2T1 843 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 CDC42BPGQ6DT37 1551 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 POLR2FP61218 127 aaKnown RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 PTPN12Q05209 780 aaKnown RBP11.23□□□□□ -0.61
CHD3-201ENST00000330494 PABPC4Q13310 644 aaKnown RBP eCLIP11.23□□□□□ -0.611e-6■■□□□ 13.3
CHD3-201ENST00000330494 CCDC121Q6ZUS5 278 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 TEKT3Q9BXF9 490 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 CCDC14Q49A88 953 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 CCDC105Q8IYK2 499 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.23□□□□□ -0.613e-20■■■□□ 17.1
CHD3-201ENST00000330494 LEMD3Q9Y2U8 911 aa11.23□□□□□ -0.61
CHD3-201ENST00000330494 RNF123Q5XPI4 1314 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 DDAH1O94760 285 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 UBE3CQ15386 1083 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 PIGSQ96S52 555 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 VPS41P49754 854 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 DCAF15Q66K64 600 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 TRIM7Q9C029 511 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 ZSWIM5Q9P217 1185 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 STK24Q9Y6E0 443 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 LARGE1O95461 756 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 SNX16P57768 344 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 CLASP1Q7Z460 1538 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 C21orf2O43822 256 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 SH3BP5O60239 455 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 SASH1O94885 1247 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 BRINP3Q76B58 766 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 TMTC1Q8IUR5 882 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 PPM1EQ8WY54 764 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 TET3O43151 1660 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 TTLL1O95922 423 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 NKX1-1Q15270 411 aaPredicted RBP11.22□□□□□ -0.61
CHD3-201ENST00000330494 MAP7D1Q3KQU3 841 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 CAPN12Q6ZSI9 719 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 NBPF11Q86T75 865 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 SLFN12Q8IYM2 578 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 MGARPQ8TDB4 240 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 IMPACTQ9P2X3 320 aa11.22□□□□□ -0.61
CHD3-201ENST00000330494 GUCY2FP51841 1108 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 LRCH2Q5VUJ6 765 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 APOA5Q6Q788 366 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 RPS6KA1Q15418 735 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 ARMCX5Q6P1M9 558 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 NAP1L3Q99457 506 aaPredicted RBP11.21□□□□□ -0.61
CHD3-201ENST00000330494 CRCPO75575 148 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 KAZNQ674X7 775 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 PPM1KQ8N3J5 372 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 GPR161Q8N6U8 529 aaKnown RBP11.21□□□□□ -0.61
CHD3-201ENST00000330494 PALLDQ8WX93 1383 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 TRMT2AQ8IZ69 625 aaKnown RBP11.21□□□□□ -0.61
CHD3-201ENST00000330494 POMGNT1Q8WZA1 660 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 RSRC1Q96IZ7 334 aaKnown RBP11.21□□□□□ -0.61
CHD3-201ENST00000330494 ZNF577Q9BSK1 485 aa11.21□□□□□ -0.61
CHD3-201ENST00000330494 TBC1D8O95759 1140 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 HOXA13P31271 388 aaPredicted RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms