RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 MOGSQ13724 837 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 PRRT2Q7Z6L0 340 aaPredicted RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 RBM46Q8TBY0 533 aaKnown RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 OXER1Q8TDS5 423 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 CHURC1Q8WUH1 139 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 TNPO1Q92973 898 aaKnown RBP11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 C12orf42Q96LP6 360 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
SNRNP40-201ENST00000263694 TCHHQ07283 1943 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 WDR33Q9C0J8 1336 aaKnown RBP11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 CXCL11O14625 94 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 PEX10O60683 326 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 F13A1P00488 732 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 TRIM29Q14134 588 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 USH1GQ495M9 461 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 CATSPERGQ6ZRH7 1159 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 SAPCD2Q86UD0 394 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 FAM160B2Q86V87 743 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 ATG4CQ96DT6 458 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 SLF1Q9BQI6 1058 aa11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 COL11A1P12107 1806 aaPredicted RBP11.23□□□□□ -0.61
SNRNP40-201ENST00000263694 LOC285556D6RIA3 1793 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 BTBD18B2RXH4 712 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 PLA2G6O60733 806 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 MMP1P03956 469 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 ZNF157P51786 506 aaPredicted RBP11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 NAPAP54920 295 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 NLRP5P59047 1200 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 RESTQ13127 1097 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 NPY5RQ15761 445 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 NOM1Q5C9Z4 860 aaKnown RBP11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 SPRYD7Q5W111 196 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 PRPF38AQ8NAV1 312 aaKnown RBP11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 MS4A4AQ96JQ5 239 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 PHF20Q9BVI0 1012 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 BARHL2Q9NY43 387 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 PPP1R9AQ9ULJ8 1098 aa11.22□□□□□ -0.61
SNRNP40-201ENST00000263694 UNCXA6NJT0 531 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L15C9J2P7 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L13C9JLJ4 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L11C9JVI0 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L18D6R9N7 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L22D6RA61 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L17D6RBQ6 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L19D6RCP7 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L20D6RJB6 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 GALR2O43603 387 aaPredicted RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 KIF23Q02241 960 aaPredicted RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 USP17L24Q0WX57 530 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 NR5A1Q13285 461 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 SNAPC2Q13487 334 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 GPAT2Q6NUI2 795 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 POTEEQ6S8J3 1075 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 FBXO11Q86XK2 927 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 RASAL3Q86YV0 1011 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 CPXCR1Q8N123 301 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 RASGRP4Q8TDF6 673 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 AGBL1Q96MI9 1066 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 P2RX7Q99572 595 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 RANBP17Q9H2T7 1088 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 RAVER2Q9HCJ3 691 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 RBM27Q9P2N5 1060 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 ABT1Q9ULW3 272 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 PCDHA1Q9Y5I3 950 aa11.21□□□□□ -0.61
SNRNP40-201ENST00000263694 CCL15-CCL14A0A0B4J2E2 113 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 SMCO2A6NFE2 343 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 TMEM88BA6NKF7 163 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 XBP1P17861 261 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 GRM1Q13255 1194 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 COG2Q14746 738 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 CCL15Q16663 113 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 EARS2Q5JPH6 523 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 RGMBQ6NW40 437 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 DIS3L2Q8IYB7 885 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 PROCA1Q8NCQ7 364 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 BRI3BPQ8WY22 251 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 SH3GLB2Q9NR46 395 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 TLL2Q9Y6L7 1015 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 ZNF536O15090 1300 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 SPDYE16A6NNV3 312 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 VWA5AO00534 786 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 GNL2Q13823 731 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 PTPN18Q99952 460 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 AMNQ9BXJ7 453 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 ASCC2Q9H1I8 757 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 SLC38A10Q9HBR0 1119 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 TFIP11Q9UBB9 837 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 AGTPBP1Q9UPW5 1226 aa11.2□□□□□ -0.62
SNRNP40-201ENST00000263694 MYH15Q9Y2K3 1946 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 BTBD19C9JJ37 291 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 ZBED4O75132 1171 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 CYP2C8P10632 490 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 CETPP11597 493 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 HOXA7P31268 230 aaPredicted RBP11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 KRT2P35908 639 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 GTF2A2P52657 109 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 DNM1Q05193 864 aaKnown RBP11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 FSTL1Q12841 308 aa11.19□□□□□ -0.62
SNRNP40-201ENST00000263694 SAFBQ15424 915 aaKnown RBP eCLIP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms