RNA–Protein interactions for RNA: ENST00000261007.9

CHRNA1-201, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 2 BASIC

Gene CHRNA1, Length 1,980 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-201ENST00000261007 TMTC1Q8IUR5 882 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 CNGA4Q8IV77 575 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 SPATA20Q8TB22 786 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 AFAP1L1Q8TED9 768 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 CLIC6Q96NY7 704 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 NCAPGQ9BPX3 1015 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 DEF6Q9H4E7 631 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 KAT14Q9H8E8 782 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 CD209Q9NNX6 404 aa12.15□□□□□ -0.46
CHRNA1-201ENST00000261007 CNTNAP5Q8WYK1 1306 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 LRRC37AA6NMS7 1700 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 MFAP3LO75121 409 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 PRDM1O75626 825 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 CALML3P27482 149 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 HSPA1LP34931 641 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 TOB1P50616 345 aaPredicted RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 GPSM2P81274 684 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 RBL2Q08999 1139 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 SPATA1Q5VX52 437 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 APTXQ7Z2E3 356 aaKnown RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 KRT27Q7Z3Y8 459 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 IGSF22Q8N9C0 903 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 FERMT2Q96AC1 680 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 FAM163AQ96GL9 167 aaPredicted RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 PYM1Q9BRP8 204 aaKnown RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 FAM204AQ9H8W3 233 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 QTRT2Q9H974 415 aaKnown RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 SH3GLB2Q9NR46 395 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 FBXO2Q9UK22 296 aaPredicted RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 SUGT1Q9Y2Z0 365 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 RHOXF2BP0C7M4 288 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 FILIP1LQ4L180 1135 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 SLC35F6Q8N357 371 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 CCDC82Q8N4S0 544 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 CCDC148Q8NFR7 591 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 MYCBPQ99417 103 aaPredicted RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 RHOXF2Q9BQY4 288 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 LZTS2Q9BRK4 669 aa12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 SAMSN1Q9NSI8 373 aaKnown RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 ADD3Q9UEY8 706 aaKnown RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 V9GY48 417 aaPredicted RBP12.14□□□□□ -0.47
CHRNA1-201ENST00000261007 GPR75-ASB3A0A0A6YYF3 556 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 LRRIQ3A6PVS8 624 aaPredicted RBP12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 PRPF6O94906 941 aaKnown RBP12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 SCG2P13521 617 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 MMS22LQ6ZRQ5 1243 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 ZNF444Q8N0Y2 327 aaPredicted RBP12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 MED15Q96RN5 788 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 CEP89Q96ST8 783 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 SUGCTQ9HAC7 445 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 MKNK2Q9HBH9 465 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 MYO6Q9UM54 1294 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 FAM205AQ6ZU69 1335 aa12.13□□□□□ -0.47
CHRNA1-201ENST00000261007 TARSL2A2RTX5 802 aaKnown RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 FOXN1O15353 648 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 SHOX2O60902 331 aaPredicted RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 RNF40O75150 1001 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 PLEKHA8P1O95397 391 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 SYF2O95926 243 aaKnown RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 AMPD2Q01433 879 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 TFAP4Q01664 338 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 PFKFB3Q16875 520 aaPredicted RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 CDKAL1Q5VV42 579 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 GALNT17Q6IS24 598 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 TADA2BQ86TJ2 420 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 SP8Q8IXZ3 490 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 SH3RF3Q8TEJ3 882 aaPredicted RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 RPGRIP1Q96KN7 1286 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 RTFDC1Q9BY42 306 aaPredicted RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 CABP5Q9NP86 173 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 VPS54Q9P1Q0 977 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 SERTAD1Q9UHV2 236 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 UBE2Q2LH0YL09 131 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 POLRMTO00411 1230 aaKnown RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 TEX33O43247 280 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 USP17L8P0C7I0 530 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 CYP2D6P10635 497 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 USP14P54578 494 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 NR5A1Q13285 461 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 GRM4Q14833 912 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 HSP90AA4PQ58FG1 418 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 FAM47AQ5JRC9 791 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 CMTR1Q8N1G2 835 aaKnown RBP12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 FLAD1Q8NFF5 587 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 PCDHB6Q9Y5E3 794 aa12.12□□□□□ -0.47
CHRNA1-201ENST00000261007 PRR29P0C7W0 189 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 TSPY3P0CV98 308 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 TSPY8P0CW00 308 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 SF3B2Q13435 895 aaKnown RBP12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 TRIM14Q14142 442 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 WWC2Q6AWC2 1192 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 MCTP2Q6DN12 878 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 RCSD1Q6JBY9 416 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 TRMT44Q8IYL2 757 aaKnown RBP12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 NLGN1Q8N2Q7 840 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 SRBD1Q8N5C6 995 aaKnown RBP12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 COA1Q9GZY4 146 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 TAOK2Q9UL54 1235 aa12.11□□□□□ -0.47
CHRNA1-201ENST00000261007 GAKO14976 1311 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms