RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 ZBTB5O15062 677 aa31.54■■■□□ 2.64
CHMP4B-201ENST00000217402 LBX2Q6XYB7 198 aa31.54■■■□□ 2.64
CHMP4B-201ENST00000217402 CPXCR1Q8N123 301 aa31.54■■■□□ 2.64
CHMP4B-201ENST00000217402 A0A0G2JMZ2 1700 aa31.54■■■□□ 2.64
CHMP4B-201ENST00000217402 PRPF3O43395 683 aaKnown RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 HSP90AA1P07900 732 aaKnown RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 RAVER2Q9HCJ3 691 aaKnown RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 ALDH1A1P00352 501 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 TAL1P17542 331 aaPredicted RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 TMEM132BQ14DG7 1078 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 SPRYD3Q8NCJ5 442 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 REPS2Q8NFH8 660 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 TXNRD2Q9NNW7 524 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 BTBD7Q9P203 1132 aa31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 ORC3Q9UBD5 711 aaPredicted RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.53■■■□□ 2.64
CHMP4B-201ENST00000217402 PNMA6FA0A0J9YX94 578 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 FDX1P10109 184 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 SLC4A3P48751 1232 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 CRHR2Q13324 411 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 PLS1Q14651 629 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 MB21D1Q8N884 522 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 SMARCC2Q8TAQ2 1214 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 ZFYVE28Q9HCC9 887 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 RBPJLQ9UBG7 517 aa31.52■■■□□ 2.64
CHMP4B-201ENST00000217402 STK36Q9NRP7 1315 aa31.51■■■□□ 2.64
CHMP4B-201ENST00000217402 PPP1R11O60927 126 aaPredicted RBP31.51■■■□□ 2.63
CHMP4B-201ENST00000217402 USH1GQ495M9 461 aa31.51■■■□□ 2.63
CHMP4B-201ENST00000217402 GTF3C2Q8WUA4 911 aaPredicted RBP31.51■■■□□ 2.63
CHMP4B-201ENST00000217402 COL11A1P12107 1806 aaPredicted RBP31.51■■■□□ 2.63
CHMP4B-201ENST00000217402 ZNF536O15090 1300 aa31.51■■■□□ 2.63
CHMP4B-201ENST00000217402 CNMDO75829 334 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 FDPSP14324 419 aaKnown RBP31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 GCLCP48506 637 aaPredicted RBP31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 PKN1Q16512 942 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 HEATR3Q7Z4Q2 680 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 ANKRD13CQ8N6S4 541 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 GPKOWQ92917 476 aaPredicted RBP eCLIP31.5■■■□□ 2.635e-7■■■■■ 43.5
CHMP4B-201ENST00000217402 AGBL1Q96MI9 1066 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 RBM27Q9P2N5 1060 aaKnown RBP31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 CPA4Q9UI42 421 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 ZNF214Q9UL59 606 aaPredicted RBP31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 SMC3Q9UQE7 1217 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 RABGAP1Q9Y3P9 1069 aa31.5■■■□□ 2.63
CHMP4B-201ENST00000217402 CA12O43570 354 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 DEXIO95424 95 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 FBXO11Q86XK2 927 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 CCPG1Q9ULG6 757 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 ADGRA2Q96PE1 1338 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 ICAM1P05362 532 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 SCG2P13521 617 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 HMGN5P82970 282 aaKnown RBP31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 PFKFB3Q16875 520 aaPredicted RBP31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 DNAJC5GQ8N7S2 189 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 AIFM3Q96NN9 605 aa31.49■■■□□ 2.63
CHMP4B-201ENST00000217402 SNRNP48Q6IEG0 339 aaKnown RBP31.48■■■□□ 2.63
CHMP4B-201ENST00000217402 INTS4Q96HW7 963 aaKnown RBP31.48■■■□□ 2.63
CHMP4B-201ENST00000217402 AMNQ9BXJ7 453 aa31.48■■■□□ 2.63
CHMP4B-201ENST00000217402 RNF186Q9NXI6 227 aa31.48■■■□□ 2.63
CHMP4B-201ENST00000217402 TLR2O60603 784 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 TRPA1O75762 1119 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 GJB2P29033 226 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 OAZ1P54368 228 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 WWC2Q6AWC2 1192 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 COA7Q96BR5 231 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 TEX13BQ9BXU2 312 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 CEP350Q5VT06 3117 aa31.47■■■□□ 2.63
CHMP4B-201ENST00000217402 STAT3P40763 770 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 ERVK-9P63128 1117 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 ERVK-24P63145 666 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 FAM184AQ8NB25 1140 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 SPATC1LQ9H0A9 340 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 PCDHA1Q9Y5I3 950 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 MYH6P13533 1939 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 TBC1D8O95759 1140 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 FOSBP53539 338 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 Q3C1V9 767 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 R3HDMLQ9H3Y0 253 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 HOMER2Q9NSB8 354 aa31.46■■■□□ 2.63
CHMP4B-201ENST00000217402 ATP2A1O14983 1001 aa31.45■■■□□ 2.62
CHMP4B-201ENST00000217402 ALAS1P13196 640 aa31.45■■■□□ 2.62
CHMP4B-201ENST00000217402 GPRC5AQ8NFJ5 357 aa31.45■■■□□ 2.62
CHMP4B-201ENST00000217402 ALG1Q9BT22 464 aa31.45■■■□□ 2.62
CHMP4B-201ENST00000217402 FAM110CQ1W6H9 321 aa31.44■■■□□ 2.62
CHMP4B-201ENST00000217402 WASF1Q92558 559 aa31.44■■■□□ 2.62
CHMP4B-201ENST00000217402 MORF4L1Q9UBU8 362 aa31.44■■■□□ 2.62
CHMP4B-201ENST00000217402 RIPK3Q9Y572 518 aa31.44■■■□□ 2.62
CHMP4B-201ENST00000217402 BCRP11274 1271 aa31.43■■■□□ 2.62
CHMP4B-201ENST00000217402 MOV10L1Q9BXT6 1211 aaKnown RBP31.43■■■□□ 2.62
CHMP4B-201ENST00000217402 VPS54Q9P1Q0 977 aa31.43■■■□□ 2.62
CHMP4B-201ENST00000217402 PCNTO95613 3336 aa31.43■■■□□ 2.62
CHMP4B-201ENST00000217402 STXBP3O00186 592 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 MAP2K1Q02750 393 aaPredicted RBP31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 C17orf99Q6UX52 265 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 BARHL2Q9NY43 387 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 DAXXQ9UER7 740 aaPredicted RBP31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 NAPAP54920 295 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 TYW1BQ6NUM6 668 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 RIOX2Q8IUF8 465 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 GJB4Q9NTQ9 266 aa31.42■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms