RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.9□□□□□ -0.029e-7■□□□□ 9.7
SF3A1-201ENST00000215793 CSADQ9Y600 493 aa14.9□□□□□ -0.02
SF3A1-201ENST00000215793 HGSO14964 777 aaPredicted RBP14.9□□□□□ -0.02
SF3A1-201ENST00000215793 CERKLQ49MI3 558 aaPredicted RBP14.9□□□□□ -0.02
SF3A1-201ENST00000215793 ARHGEF16Q5VV41 709 aa14.9□□□□□ -0.02
SF3A1-201ENST00000215793 PLCD3Q8N3E9 789 aa14.9□□□□□ -0.02
SF3A1-201ENST00000215793 DESI2Q9BSY9 194 aa14.9□□□□□ -0.02
SF3A1-201ENST00000215793 RTEL1Q9NZ71 1219 aa14.9□□□□□ -0.02
SF3A1-201ENST00000215793 DDX25Q9UHL0 483 aaKnown RBP14.9□□□□□ -0.02
SF3A1-201ENST00000215793 LAD1O00515 517 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 POLR2BP30876 1174 aaKnown RBP14.89□□□□□ -0.03
SF3A1-201ENST00000215793 PTGDRQ13258 359 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 XKR9Q5GH70 373 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 GSDMBQ8TAX9 411 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 BCL2L12Q9HB09 334 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 ADAM9Q13443 819 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 LRRC8AQ8IWT6 810 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 TYW1Q9NV66 732 aaKnown RBP14.89□□□□□ -0.03
SF3A1-201ENST00000215793 SEMA3EO15041 775 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 CIAO1O76071 339 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 TNNC2P02585 160 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 ALAS1P13196 640 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 ICA1Q05084 483 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 PSMD6Q15008 389 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 CCDC38Q502W7 563 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 KRT12Q99456 494 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 ADPGKQ9BRR6 497 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 TEKT3Q9BXF9 490 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 OSBPL3Q9H4L5 887 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 RABEP2Q9H5N1 569 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 K7ENM7 598 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 PDE6CP51160 858 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 ADAMTS12P58397 1594 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 PRKG1Q13976 671 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 LRRC24Q50LG9 513 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 SPC25Q9HBM1 224 aa14.89□□□□□ -0.03
SF3A1-201ENST00000215793 EPN1Q9Y6I3 576 aaPredicted RBP14.89□□□□□ -0.03
SF3A1-201ENST00000215793 GOLGA8KD6RF30 607 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 ZNF827Q17R98 1081 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 CCDC17Q96LX7 622 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 KLHL14Q9P2G3 628 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 TTLL3Q9Y4R7 772 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 MAP3K15Q6ZN16 1313 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 MAN1A1P33908 653 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 NDUFA8P51970 172 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 PDZD4Q76G19 769 aaPredicted RBP14.88□□□□□ -0.03
SF3A1-201ENST00000215793 RILPQ96NA2 401 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 RNF26Q9BY78 433 aaPredicted RBP14.88□□□□□ -0.03
SF3A1-201ENST00000215793 BZW2Q9Y6E2 419 aaKnown RBP14.88□□□□□ -0.03
SF3A1-201ENST00000215793 ADCY8P40145 1251 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 GUCY2FP51841 1108 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 POLR2FP61218 127 aaKnown RBP14.88□□□□□ -0.03
SF3A1-201ENST00000215793 CHRNDQ07001 517 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 SLC39A14Q15043 492 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 BBOF1Q8ND07 529 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 TSC1Q92574 1164 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 FOXP1Q9H334 677 aaPredicted RBP14.88□□□□□ -0.03
SF3A1-201ENST00000215793 HESX1Q9UBX0 185 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 USH1CQ9Y6N9 552 aa14.88□□□□□ -0.03
SF3A1-201ENST00000215793 BTDP43251 543 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 APBA1Q02410 837 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 GPATCH4Q5T3I0 446 aaKnown RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 MAP3K21Q5TCX8 1036 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SLFN13Q68D06 897 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 ARMCX5Q6P1M9 558 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 PLA2G4DQ86XP0 818 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SPATS2Q86XZ4 545 aaKnown RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 MIPOL1Q8TD10 442 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 GDAP1L1Q96MZ0 367 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 LSG1Q9H089 658 aaKnown RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 PPP6R2O75170 966 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 KRT81Q14533 505 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 ZMYM1Q5SVZ6 1142 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 LRRC47Q8N1G4 583 aaKnown RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 ANKRD42Q8N9B4 389 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SYMPKQ92797 1274 aaKnown RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 MED4Q9NPJ6 270 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 FRMPD2Q68DX3 1309 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 MYOM2P54296 1465 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 ATF7P17544 494 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 KIF11P52732 1056 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 RAB3IPQ96QF0 476 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SLC39A2Q9NP94 309 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SOS2Q07890 1332 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 SEPT14Q6ZU15 432 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 TRIM50Q86XT4 487 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 GPKOWQ92917 476 aaPredicted RBP eCLIP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 USP21Q9UK80 565 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 ZNF215Q9UL58 517 aaPredicted RBP14.87□□□□□ -0.03
SF3A1-201ENST00000215793 PCDHA5Q9Y5H7 936 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 PCDHA1Q9Y5I3 950 aa14.87□□□□□ -0.03
SF3A1-201ENST00000215793 BPIFB4P59827 614 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 SCRN1Q12765 414 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 BSPRYQ5W0U4 402 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 PPM1KQ8N3J5 372 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-201ENST00000215793 PPP4R1Q8TF05 950 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 AK8Q96MA6 479 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 CLIC6Q96NY7 704 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 ZNF277Q9NRM2 450 aaPredicted RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms