RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 DSG3P32926 999 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 ANP32AP39687 249 aaKnown RBP14.31□□□□□ -0.12
LINC00339-213ENST00000642137 STAT2P52630 851 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 KIF23Q02241 960 aaPredicted RBP14.31□□□□□ -0.12
LINC00339-213ENST00000642137 SREBF2Q12772 1141 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 RASGRP2Q7LDG7 609 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 CCDC83Q8IWF9 413 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 PTPN18Q99952 460 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 SPZ1Q9BXG8 430 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 TANGO6Q9C0B7 1094 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 NCOA5Q9HCD5 579 aaKnown RBP14.31□□□□□ -0.12
LINC00339-213ENST00000642137 ZCCHC17Q9NP64 241 aaKnown RBP14.31□□□□□ -0.12
LINC00339-213ENST00000642137 MYPNQ86TC9 1320 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 WDR33Q9C0J8 1336 aaKnown RBP14.31□□□□□ -0.12
LINC00339-213ENST00000642137 PRPF3O43395 683 aaKnown RBP14.3□□□□□ -0.12
LINC00339-213ENST00000642137 FLOT1O75955 427 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 CDKL5O76039 1030 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 PLEKHA8P1O95397 391 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 MAP2K2P36507 400 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 FUT2Q10981 343 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 ST3GAL1Q11201 340 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 OTUD7BQ6GQQ9 843 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 NBPF11Q86T75 865 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 ADGRF4Q8IZF3 695 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 INTS4Q96HW7 963 aaKnown RBP14.3□□□□□ -0.12
LINC00339-213ENST00000642137 SLF1Q9BQI6 1058 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 PNMA3Q9UL41 463 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 PPP1R9AQ9ULJ8 1098 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 PRR12Q9ULL5 1215 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 ISY1Q9ULR0 285 aaKnown RBP14.3□□□□□ -0.12
LINC00339-213ENST00000642137 ADAMTS5Q9UNA0 930 aa14.3□□□□□ -0.12
LINC00339-213ENST00000642137 PDHXO00330 501 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 CYTH3O43739 400 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 CTDNEP1O95476 244 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 SLC16A2P36021 539 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 VEGFBP49765 207 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 SSRP1Q08945 709 aaKnown RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 IKQ13123 557 aaPredicted RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 SYDE2Q5VT97 1194 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 LBX2Q6XYB7 198 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 IFNL1Q8IU54 200 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 CMTR1Q8N1G2 835 aaKnown RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 CCDC82Q8N4S0 544 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 NSUN7Q8NE18 718 aaKnown RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 MTMR8Q96EF0 704 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 P2RX7Q99572 595 aaKnown RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 RNF26Q9BY78 433 aaPredicted RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 ASCC2Q9H1I8 757 aaPredicted RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 JMJD4Q9H9V9 463 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 VAT1LQ9HCJ6 419 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 FBXO28Q9NVF7 368 aa14.29□□□□□ -0.12
LINC00339-213ENST00000642137 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.29□□□□□ -0.12
LINC00339-213ENST00000642137 IRX3P78415 501 aaPredicted RBP14.28□□□□□ -0.12
LINC00339-213ENST00000642137 HTRA3P83110 453 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 RLFQ13129 1914 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 GRM1Q13255 1194 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 SLC35G1Q2M3R5 365 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 FAM43AQ8N2R8 423 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 SMARCC2Q8TAQ2 1214 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 GTF3C2Q8WUA4 911 aaPredicted RBP14.28□□□□□ -0.12
LINC00339-213ENST00000642137 KIFC2Q96AC6 838 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 RRP36Q96EU6 259 aaKnown RBP14.28□□□□□ -0.12
LINC00339-213ENST00000642137 ZIC5Q96T25 663 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 CPVLQ9H3G5 476 aa14.28□□□□□ -0.12
LINC00339-213ENST00000642137 RBM27Q9P2N5 1060 aaKnown RBP14.28□□□□□ -0.12
LINC00339-213ENST00000642137 V9GY48 417 aaPredicted RBP14.28□□□□□ -0.12
LINC00339-213ENST00000642137 BAZ2BQ9UIF8 2168 aaKnown RBP14.27□□□□□ -0.12
LINC00339-213ENST00000642137 PARP14Q460N5 1801 aa14.27□□□□□ -0.12
LINC00339-213ENST00000642137 CNTNAP5Q8WYK1 1306 aa14.27□□□□□ -0.12
LINC00339-213ENST00000642137 AOC2O75106 756 aa14.27□□□□□ -0.13
LINC00339-213ENST00000642137 ZBED4O75132 1171 aa14.27□□□□□ -0.13
LINC00339-213ENST00000642137 FMNL1O95466 1100 aaPredicted RBP14.27□□□□□ -0.13
LINC00339-213ENST00000642137 HMGN5P82970 282 aaKnown RBP14.27□□□□□ -0.13
LINC00339-213ENST00000642137 AKAP17AQ02040 695 aaKnown RBP14.27□□□□□ -0.13
LINC00339-213ENST00000642137 TRIM22Q8IYM9 498 aa14.27□□□□□ -0.13
LINC00339-213ENST00000642137 RANBP17Q9H2T7 1088 aaKnown RBP14.27□□□□□ -0.13
LINC00339-213ENST00000642137 STK36Q9NRP7 1315 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 PNMA6FA0A0J9YX94 578 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 SPDYE16A6NNV3 312 aaPredicted RBP14.26□□□□□ -0.13
LINC00339-213ENST00000642137 IGF2BP3O00425 579 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00339-213ENST00000642137 VWA5AO00534 786 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 ZBTB5O15062 677 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 ALDH1A1P00352 501 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 HERVK_113P62684 666 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 MB21D1Q8N884 522 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 PHKBQ93100 1093 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 ATG4CQ96DT6 458 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 PIGSQ96S52 555 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 SLC26A6Q9BXS9 759 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 SLC38A10Q9HBR0 1119 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 PNMA2Q9UL42 364 aa14.26□□□□□ -0.13
LINC00339-213ENST00000642137 MYH6P13533 1939 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 PTPDC1A2A3K4 754 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 ATP2A1O14983 1001 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 DEXIO95424 95 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 FDPSP14324 419 aaKnown RBP14.25□□□□□ -0.13
LINC00339-213ENST00000642137 GCLCP48506 637 aaPredicted RBP14.25□□□□□ -0.13
LINC00339-213ENST00000642137 OAZ1P54368 228 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 TRAF1Q13077 416 aa14.25□□□□□ -0.13
LINC00339-213ENST00000642137 PKN1Q16512 942 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms