RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 STAT6P42226 847 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PIP4K2AP48426 406 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 TUBA1BP68363 451 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 TBL3Q12788 808 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC153Q494R4 210 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 GLE1Q53GS7 698 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 C8orf74Q6P047 294 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 TUBA1AQ71U36 451 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CEP70Q8NHQ1 597 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 UHMK1Q8TAS1 419 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 DNAJC9Q8WXX5 260 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 STMN2Q93045 179 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CNKSR1Q969H4 720 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 SELENOSQ9BQE4 189 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 FANCLQ9NW38 375 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ATP6V0A2Q9Y487 856 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 IKBKGQ9Y6K9 419 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 REREQ9P2R6 1566 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 USP46P62068 366 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PABPC4Q13310 644 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 NCAPH2Q6IBW4 605 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ZC3H18Q86VM9 953 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 AGAP11Q8TF27 550 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 FBXO41Q8TF61 875 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 LTV1Q96GA3 475 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 NUP88Q99567 741 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PALD1Q9ULE6 856 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 MAPK8IP1Q9UQF2 711 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ADGRL1O94910 1474 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 BCORL1Q5H9F3 1711 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SSH2Q76I76 1423 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 KDM5CP41229 1560 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 CCT8L1PA6NM43 557 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 MYCLP1P12525 358 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RFC5P40937 340 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PDE1AP54750 535 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 LONRF3Q496Y0 759 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ZMYM1Q5SVZ6 1142 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 TOGARAM2Q6ZUX3 1019 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 INTS8Q75QN2 995 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ARHGEF25Q86VW2 580 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 TMTC1Q8IUR5 882 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SIX5Q8N196 739 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 STAG2Q8N3U4 1231 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PPP2R3CQ969Q6 453 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RNPC3Q96LT9 517 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 CDC5LQ99459 802 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SLF1Q9BQI6 1058 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SLC39A3Q9BRY0 314 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 UBE2OQ9C0C9 1292 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 TUBGCP4Q9UGJ1 667 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PALM3A6NDB9 673 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SRRM3A6NNA2 597 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 IKBKBO14920 756 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 HNRNPRO43390 633 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 LCA5LO95447 670 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 LMNAP02545 664 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PHBP35232 272 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 GNAQP50148 359 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ADARP55265 1226 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 HDAC4P56524 1084 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 GOLGA8FQ08AF8 430 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 GOLGA8DPQ0D2H9 430 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ITGA7Q13683 1181 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PHLDB3Q6NSJ2 640 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RBM43Q6ZSC3 357 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 TAOK1Q7L7X3 1001 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SPIRE2Q8WWL2 714 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 LRRC45Q96CN5 670 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PRAM1Q96QH2 718 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 KIAA1468Q9P260 1216 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 STOML1Q9UBI4 398 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PNMA2Q9UL42 364 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 MTMR7Q9Y216 660 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 MAGEA13PA6NCF6 341 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ZBTB7BO15156 539 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RAB11FIP3O75154 756 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 MAP3K12Q12852 859 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RCN2Q14257 317 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 ATL3Q6DD88 541 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 CCNI2Q6ZMN8 369 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 RSPH3Q86UC2 560 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 GSPT2Q8IYD1 628 aaKnown RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 AIDAQ96BJ3 306 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 PCMTD1Q96MG8 357 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-216ENST00000637968 SMC6Q96SB8 1091 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC113Q9H0I3 377 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 C9orf84Q5VXU9 1444 aa6.31□□□□□ -1.4
SCN1A-216ENST00000637968 TBC1D12O60347 775 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 MMEP08473 750 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 KRT83P78385 493 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 GUCY2DQ02846 1103 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 C6orf163Q5TEZ5 329 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 IRGCQ6NXR0 463 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 FAM186BQ8IYM0 893 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 SH2D3CQ8N5H7 860 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 ATP6V1G3Q96LB4 118 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 RPS6KC1Q96S38 1066 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 DNAJC5Q9H3Z4 198 aa6.3□□□□□ -1.4
SCN1A-216ENST00000637968 CNGB3Q9NQW8 809 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms