RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CARD6Q9BX69 1037 aa4.5□□□□□ -1.69
SCN1A-214ENST00000637038 RPTORQ8N122 1335 aa4.5□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF532Q9HCE3 1301 aa4.5□□□□□ -1.69
SCN1A-214ENST00000637038 IRS4O14654 1257 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PPFIA3O75145 1194 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 IVLP07476 585 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NPR1P16066 1061 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 H2AFXP16104 143 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ATP6V1AP38606 617 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NT5C2P49902 561 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NBPF9Q3BBW0 867 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ISM2Q6H9L7 571 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TMTC1Q8IUR5 882 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 UBXN6Q9BZV1 441 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 LRP2BPQ9P2M1 347 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MYO1AQ9UBC5 1043 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 HPSEQ9Y251 543 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PCDHA5Q9Y5H7 936 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SYNRGQ9UMZ2 1314 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MMP1P03956 469 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PTPREP23469 700 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ADORA1P30542 326 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TNNT3P45378 269 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CLCN6P51797 869 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CKAP4Q07065 602 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NCAPHQ15003 741 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TJAP1Q5JTD0 557 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF697Q5TEC3 545 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SPATA1Q5VX52 437 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MSL1Q68DK7 614 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 HDXQ7Z353 690 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TRMT44Q8IYL2 757 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 VGLL2Q8N8G2 317 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CTCFLQ8NI51 663 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MED15Q96RN5 788 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CDC5LQ99459 802 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PUS3Q9BZE2 481 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 GBA2Q9HCG7 927 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 FANCLQ9NW38 375 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CTAGE15A4D2H0 777 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TNFRSF10AO00220 468 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 POLR2DO15514 142 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TADA3O75528 432 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MBD4O95243 580 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CSF1RP07333 972 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CTAGE8P0CG41 777 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PNMA6AP0CW24 399 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ATP2B1P20020 1258 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PPP1R2P41236 205 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 HUNKP57058 714 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CHMP4BP1P59074 171 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NKX1-1Q15270 411 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 WHAMMP3Q1A5X7 153 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC152Q4G0S7 254 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC178Q5BJE1 867 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 GIGYF2Q6Y7W6 1299 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CTAGE6Q86UF2 777 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 EGFL6Q8IUX8 553 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 TMEM139Q8IV31 216 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CTAGE4Q8IX94 777 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 IGSF22Q8N9C0 903 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 IQUBQ8NA54 791 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ANKLE1Q8NAG6 615 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 BORCS6Q96GS4 357 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 GSDMAQ96QA5 445 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 RNF26Q9BY78 433 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PUS7LQ9H0K6 701 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 MAN1B1Q9UKM7 699 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SRPRBQ9Y5M8 271 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SLC4A4Q9Y6R1 1079 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 COL1A1P02452 1464 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC151A5D8V7 595 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ERICH4A6NGS2 130 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 KIF28PB7ZC32 967 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 C21orf2O43822 256 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PDE8BO95263 885 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CALML3P27482 149 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 KIF5BP33176 963 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 ANTXR2P58335 489 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SEMA3FQ13275 785 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 FAM114A1Q8IWE2 563 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 IFNL3Q8IZI9 196 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 SPATA5Q8NB90 893 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 NOC3LQ8WTT2 800 aaKnown RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 PHKBQ93100 1093 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 IQCDQ96DY2 449 aa4.49□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC85AQ96PX6 553 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-214ENST00000637038 N4BP3O15049 544 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 ARID4AP29374 1257 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 NUBP1P53384 320 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 SHC4Q6S5L8 630 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 CYP26C1Q6V0L0 522 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 MAGEB6Q8N7X4 407 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 FAM89AQ96GI7 184 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 SGSM3Q96HU1 749 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 RPGRIP1Q96KN7 1286 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 NAPGQ99747 312 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-214ENST00000637038 FAM107BQ9H098 131 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 TMX1Q9H3N1 280 aa4.48□□□□□ -1.69
SCN1A-214ENST00000637038 AATFQ9NY61 560 aaKnown RBP eCLIP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms