RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ISM2Q6H9L7 571 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 TYW1BQ6NUM6 668 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 CCDC186Q7Z3E2 898 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 FAM200AQ8TCP9 573 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 RASGRP4Q8TDF6 673 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLN6-217ENST00000636964 V9GYY5 206 aaPredicted RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 BIN1O00499 593 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 SYKP43405 635 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 ZNF165P49910 485 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 PIK3AP1Q6ZUJ8 805 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 C11orf57Q6ZUT1 292 aaPredicted RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 HEATR3Q7Z4Q2 680 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 KRI1Q8N9T8 703 aaKnown RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 BRMS1Q9HCU9 246 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 ZNF446Q9NWS9 450 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 CLIP2Q9UDT6 1046 aa13.11□□□□□ -0.31
CLN6-217ENST00000636964 FRMPD2Q68DX3 1309 aaPredicted RBP13.11□□□□□ -0.31
CLN6-217ENST00000636964 PALM3A6NDB9 673 aaPredicted RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 DDTLA6NHG4 134 aaPredicted RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 CTAGE5O15320 804 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 SHMT1P34896 483 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 RNF217Q8TC41 542 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 USP27XA6NNY8 438 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 MAFGO15525 162 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 PARP1P09874 1014 aaKnown RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 TOP1P11387 765 aaKnown RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 TNNT1P13805 278 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 MTMR4Q9NYA4 1195 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 FAM198AQ9UFP1 575 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 TTC36A6NLP5 189 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 HLA-DOAP06340 250 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 MAP2K1Q02750 393 aaPredicted RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 LARGE2Q8N3Y3 721 aa13.1□□□□□ -0.31
CLN6-217ENST00000636964 PRMT6Q96LA8 375 aaPredicted RBP13.1□□□□□ -0.31
CLN6-217ENST00000636964 TRIM75PA6NK02 468 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 RAD21O60216 631 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 CUTAO60888 179 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 GNAQP50148 359 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 CCDC93Q567U6 631 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 WWC2Q6AWC2 1192 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 USP49Q70CQ1 688 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 FBXO2Q9UK22 296 aaPredicted RBP13.09□□□□□ -0.31
CLN6-217ENST00000636964 CCDC144BQ3MJ40 725 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 CFAP100Q494V2 611 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 RESP18Q5W5W9 173 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 FBXO38Q6PIJ6 1188 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 SH3BP5LQ7L8J4 393 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 PDILTQ8N807 584 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 SUPT20HQ8NEM7 779 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 TNFRSF25Q93038 417 aa13.09□□□□□ -0.31
CLN6-217ENST00000636964 LONRF3Q496Y0 759 aa13.08□□□□□ -0.31
CLN6-217ENST00000636964 TIGD1Q96MW7 591 aa13.08□□□□□ -0.31
CLN6-217ENST00000636964 DNAJC18Q9H819 358 aa13.08□□□□□ -0.31
CLN6-217ENST00000636964 GPCPD1Q9NPB8 672 aa13.08□□□□□ -0.31
CLN6-217ENST00000636964 KCNH3Q9ULD8 1083 aa13.08□□□□□ -0.31
CLN6-217ENST00000636964 PTPREP23469 700 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 NT5C2P49902 561 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 KRT222Q8N1A0 295 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 TRERF1Q96PN7 1200 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 KIAA1468Q9P260 1216 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 ZNF215Q9UL58 517 aaPredicted RBP13.08□□□□□ -0.32
CLN6-217ENST00000636964 HPSEQ9Y251 543 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 C10orf71Q711Q0 1435 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 FOCADQ5VW36 1801 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 TNNT3P45378 269 aaPredicted RBP13.08□□□□□ -0.32
CLN6-217ENST00000636964 CACTINQ8WUQ7 758 aaKnown RBP13.08□□□□□ -0.32
CLN6-217ENST00000636964 CSRNP2Q9H175 543 aa13.08□□□□□ -0.32
CLN6-217ENST00000636964 PSMD14O00487 310 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 MCM7P33993 719 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 STX1AQ16623 288 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 TTC38Q5R3I4 469 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 BLIDQ8IZY5 108 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 PIGSQ96S52 555 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 SERPINA10Q9UK55 444 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 QSER1Q2KHR3 1735 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 CLRN2A0PK11 232 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 FOXN1O15353 648 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 TPM3P06753 285 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 PDHBP11177 359 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 PNOCQ13519 176 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 ARID5BQ14865 1188 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 RTKN2Q8IZC4 609 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 SWAP70Q9UH65 585 aa13.07□□□□□ -0.32
CLN6-217ENST00000636964 FKBP1AP62942 108 aaKnown RBP13.06□□□□□ -0.32
CLN6-217ENST00000636964 SATB1Q01826 763 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 PLA2G4DQ86XP0 818 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 MRIQ9BWK5 157 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 CEP131Q9UPN4 1083 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 SRPRBQ9Y5M8 271 aaKnown RBP13.06□□□□□ -0.32
CLN6-217ENST00000636964 TCP10L2B9ZVM9 353 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 POLR2DO15514 142 aaKnown RBP13.06□□□□□ -0.32
CLN6-217ENST00000636964 PTGDRQ13258 359 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 ZRSR1Q15695 479 aaKnown RBP13.06□□□□□ -0.32
CLN6-217ENST00000636964 CNNM3Q8NE01 707 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 SLC16A10Q8TF71 515 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 EPSTI1Q96J88 318 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 STXBP3O00186 592 aa13.06□□□□□ -0.32
CLN6-217ENST00000636964 GDF11O95390 407 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms