RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 BICDL2A1A5D9 508 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 BUB1O43683 1085 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 NMT2O60551 498 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 TXKP42681 527 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 PRCPP42785 496 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 SF3A3Q12874 501 aaKnown RBP eCLIP14.07□□□□□ -0.162e-6■■■■□ 21
LIG1-221ENST00000613670 RSRC2Q7L4I2 434 aaKnown RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 KCND1Q9NSA2 647 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 PP2D1A8MPX8 630 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 ATP1A1P05023 1023 aaKnown RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 GUCY2FP51841 1108 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 BEND6Q5SZJ8 279 aaPredicted RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 TCERG1LQ5VWI1 586 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 POLD4Q9HCU8 107 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 STK36Q9NRP7 1315 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 NUTM2BA6NNL0 878 aaPredicted RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 NUTM2EB1AL46 878 aaPredicted RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 CCNT1O60563 726 aaKnown RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 DNM2P50570 870 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 IRX3P78415 501 aaPredicted RBP14.07□□□□□ -0.16
LIG1-221ENST00000613670 SRLQ86TD4 932 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 ANKIB1Q9P2G1 1089 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 LCMT1Q9UIC8 334 aa14.07□□□□□ -0.16
LIG1-221ENST00000613670 EIF3CLB5ME19 914 aaKnown RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 GOLGA8HP0CJ92 632 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 TFAP4Q01664 338 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 E2F4Q16254 413 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 SPTY2D1Q68D10 685 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 BLIDQ8IZY5 108 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 EIF3CQ99613 913 aaKnown RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 SLC39A2Q9NP94 309 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 RWDD2AQ9UIY3 292 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 FGFR1OPO95684 399 aaKnown RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 ZNF18P17022 549 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 IKQ13123 557 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 PRPF4BQ13523 1007 aaKnown RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 PPP2R5BQ15173 497 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 TMEM266Q2M3C6 531 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 ZNF658Q5TYW1 1059 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 RASGRP2Q7LDG7 609 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 ENAHQ8N8S7 591 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 MMS19Q96T76 1030 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 HSD3B7Q9H2F3 369 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 MYO1AQ9UBC5 1043 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 LRWD1Q9UFC0 647 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 ZNF185O15231 689 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 ARID4AP29374 1257 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 INPP5BP32019 993 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 CHRNDQ07001 517 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 TICAM2Q86XR7 235 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 PIGBQ92521 554 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 KIFC2Q96AC6 838 aa14.06□□□□□ -0.16
LIG1-221ENST00000613670 KDM6AO15550 1401 aaPredicted RBP14.06□□□□□ -0.16
LIG1-221ENST00000613670 G3V3G9 751 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 ERLIN2O94905 339 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 DCAF8Q5TAQ9 597 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 CABP7Q86V35 215 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 ANKZF1Q9H8Y5 726 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 FAM217BQ9NTX9 383 aaPredicted RBP14.05□□□□□ -0.16
LIG1-221ENST00000613670 GGCXP38435 758 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 TAX1BP1Q86VP1 789 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 KLHL7Q8IXQ5 586 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 SAP30BPQ9UHR5 308 aaKnown RBP14.05□□□□□ -0.16
LIG1-221ENST00000613670 SLIT1O75093 1534 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 ERVK-24P63145 666 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 TBX2Q13207 712 aaPredicted RBP14.05□□□□□ -0.16
LIG1-221ENST00000613670 MB21D1Q8N884 522 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 STAG1Q8WVM7 1258 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 CNOT6LQ96LI5 555 aaKnown RBP14.05□□□□□ -0.16
LIG1-221ENST00000613670 CAPS2Q9BXY5 557 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 GOPCQ9HD26 462 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 TBC1D7Q9P0N9 293 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 ZNF652Q9Y2D9 606 aa14.05□□□□□ -0.16
LIG1-221ENST00000613670 XRN1Q8IZH2 1706 aaKnown RBP14.04□□□□□ -0.16
LIG1-221ENST00000613670 TRAF5O00463 557 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 ABL1P00519 1130 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 IFFO1Q0D2I5 559 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 KRT26Q7Z3Y9 468 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 SMCR8Q8TEV9 937 aaPredicted RBP14.04□□□□□ -0.16
LIG1-221ENST00000613670 CEP89Q96ST8 783 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 CCDC113Q9H0I3 377 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 JCADQ9P266 1359 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 TECP42680 631 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 RAPGEF1Q13905 1077 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 FOXR1Q6PIV2 292 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 NKX2-3Q8TAU0 364 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 SPAG5Q96R06 1193 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 NUP58Q9BVL2 599 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 NBPF3Q9H094 633 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 NHEJ1Q9H9Q4 299 aaPredicted RBP14.04□□□□□ -0.16
LIG1-221ENST00000613670 BTG4Q9NY30 223 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 L1RE1Q9UN81 338 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 PRPF3O43395 683 aaKnown RBP14.04□□□□□ -0.16
LIG1-221ENST00000613670 MOCS3O95396 460 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 TMEM139Q8IV31 216 aa14.04□□□□□ -0.16
LIG1-221ENST00000613670 GOLGA6L7A0A1B0GV03 622 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 TNNI2P48788 182 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 SELENOOQ9BVL4 669 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 RAB34Q9BZG1 259 aa14.03□□□□□ -0.16
LIG1-221ENST00000613670 FAM208AQ9UK61 1670 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms