RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TNS2Q63HR2 1409 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 AATKQ6ZMQ8 1374 aa6.82□□□□□ -1.32
LINC00540-201ENST00000611481 GCC2Q8IWJ2 1684 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 BMP6P22004 513 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 LRRC14Q15048 493 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.81□□□□□ -1.32
LINC00540-201ENST00000611481 SCARA3Q6AZY7 606 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 JMYQ8N9B5 988 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 FBXO15Q8NCQ5 510 aaPredicted RBP6.81□□□□□ -1.32
LINC00540-201ENST00000611481 ZNF507Q8TCN5 953 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 CCDC120Q96HB5 630 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 C1orf115Q9H7X2 142 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 KANK1Q14678 1352 aa6.81□□□□□ -1.32
LINC00540-201ENST00000611481 C1QTNF9P0C862 333 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 HTRA3P83110 453 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 LLGL2Q6P1M3 1020 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 C22orf34Q6ZV56 151 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 C3orf58Q8NDZ4 430 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 CCER1Q8TC90 406 aaPredicted RBP6.8□□□□□ -1.32
LINC00540-201ENST00000611481 SEMA3GQ9NS98 782 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 C19orf73Q9NVV2 129 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 TPX2Q9ULW0 747 aaKnown RBP6.8□□□□□ -1.32
LINC00540-201ENST00000611481 PCDHA4Q9UN74 947 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 MAP3K5Q99683 1374 aa6.8□□□□□ -1.32
LINC00540-201ENST00000611481 ARHGEF5Q12774 1597 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 ENC1O14682 589 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 SLITRK5O94991 958 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 GSTT1P30711 240 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 SFRP5Q5T4F7 317 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 CDKAL1Q5VV42 579 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 TPTE2Q6XPS3 522 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 TMC7Q7Z402 723 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 MFSD4AQ8N468 514 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 ELMO3Q96BJ8 720 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 DIRC2Q96SL1 478 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 MTFR1LQ9H019 292 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 NSUN3Q9H649 340 aaKnown RBP6.79□□□□□ -1.32
LINC00540-201ENST00000611481 BTG4Q9NY30 223 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 PPM1HQ9ULR3 514 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 THSD7AQ9UPZ6 1657 aa6.79□□□□□ -1.32
LINC00540-201ENST00000611481 SPATA31A5Q5VU36 1347 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 SPATA31A3Q5VYP0 1347 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 SPATA31A7Q8IWB4 1347 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 ABCC5O15440 1437 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 NEXMIFQ5QGS0 1516 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 DUOX2Q9NRD8 1548 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 PAGE1O75459 146 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 KRT1P04264 644 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 NPM2Q86SE8 214 aaKnown RBP6.78□□□□□ -1.32
LINC00540-201ENST00000611481 METP08581 1390 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 NRAPQ86VF7 1730 aa6.78□□□□□ -1.32
LINC00540-201ENST00000611481 PNMA6FA0A0J9YX94 578 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 PRR33A8MZF0 331 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 H3BS24 57 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 GRIN3BO60391 1043 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 TMEM253P0C7T8 217 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 PLCB3Q01970 1234 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 TRIM26Q12899 539 aaPredicted RBP6.77□□□□□ -1.33
LINC00540-201ENST00000611481 SRCIN1Q9C0H9 1055 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 RAPGEFL1Q9UHV5 662 aa6.77□□□□□ -1.33
LINC00540-201ENST00000611481 LRPPRCP42704 1394 aaKnown RBP6.77□□□□□ -1.33
LINC00540-201ENST00000611481 GOLGB1Q14789 3259 aaKnown RBP6.77□□□□□ -1.33
LINC00540-201ENST00000611481 LMTK2Q8IWU2 1503 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 WDR90Q96KV7 1748 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 NPIPB6E9PJ23 425 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 PRRG2O14669 202 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 HSPA1AP0DMV8 641 aaKnown RBP6.76□□□□□ -1.33
LINC00540-201ENST00000611481 HSPA1BP0DMV9 641 aaKnown RBP6.76□□□□□ -1.33
LINC00540-201ENST00000611481 RAC2P15153 192 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 FGD1P98174 961 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 ENOX2Q16206 610 aaKnown RBP6.76□□□□□ -1.33
LINC00540-201ENST00000611481 ZNF746Q6NUN9 644 aaPredicted RBP6.76□□□□□ -1.33
LINC00540-201ENST00000611481 TTLL10Q6ZVT0 673 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 THAP5Q7Z6K1 395 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 AMIGO3Q86WK7 504 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 ALPK1Q96QP1 1244 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 MIPEPQ99797 713 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 CYP8B1Q9UNU6 501 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 ST14Q9Y5Y6 855 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 CAPN6Q9Y6Q1 641 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 CROCC2H7BZ55 1655 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 EEA1Q15075 1411 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 NCANO14594 1321 aa6.76□□□□□ -1.33
LINC00540-201ENST00000611481 PRAMEF27A3QJZ7 478 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 SLBPQ14493 270 aaKnown RBP eCLIP6.75□□□□□ -1.33
LINC00540-201ENST00000611481 DSC3Q14574 896 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 MFSD2AQ8NA29 543 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 NLGN2Q8NFZ4 835 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 EPB41L4BQ9H329 900 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 DCP1AQ9NPI6 582 aaPredicted RBP6.75□□□□□ -1.33
LINC00540-201ENST00000611481 STK32BQ9NY57 414 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 DCTN4Q9UJW0 460 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 NRXN3Q9Y4C0 1643 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 CNTNAP4Q9C0A0 1308 aa6.75□□□□□ -1.33
LINC00540-201ENST00000611481 ADCY9O60503 1353 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 KIF15Q9NS87 1388 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 FBXO24O75426 580 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 CAP2P40123 477 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 INPP5AQ14642 412 aa6.74□□□□□ -1.33
LINC00540-201ENST00000611481 RASIP1Q5U651 963 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms