RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 STAT2P52630 851 aa13□□□□□ -0.33
LIG1-211ENST00000596457 TMEM132BQ14DG7 1078 aa13□□□□□ -0.33
LIG1-211ENST00000596457 SLC9C1Q4G0N8 1177 aa13□□□□□ -0.33
LIG1-211ENST00000596457 TTBK2Q6IQ55 1244 aa13□□□□□ -0.33
LIG1-211ENST00000596457 GPR142Q7Z601 462 aa13□□□□□ -0.33
LIG1-211ENST00000596457 PLEKHH3Q7Z736 793 aa13□□□□□ -0.33
LIG1-211ENST00000596457 FAM160B2Q86V87 743 aa13□□□□□ -0.33
LIG1-211ENST00000596457 MB21D1Q8N884 522 aa13□□□□□ -0.33
LIG1-211ENST00000596457 PNMA1Q8ND90 353 aa13□□□□□ -0.33
LIG1-211ENST00000596457 CHURC1Q8WUH1 139 aa13□□□□□ -0.33
LIG1-211ENST00000596457 GMCL1Q96IK5 515 aa13□□□□□ -0.33
LIG1-211ENST00000596457 MOV10L1Q9BXT6 1211 aaKnown RBP13□□□□□ -0.33
LIG1-211ENST00000596457 SPATC1LQ9H0A9 340 aa13□□□□□ -0.33
LIG1-211ENST00000596457 PRC1O43663 620 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 GOLGA8HP0CJ92 632 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 ERCC3P19447 782 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 CYP2B6P20813 491 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 NT5C2P49902 561 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 WTAPQ15007 396 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 SART3Q15020 963 aaKnown RBP12.99□□□□□ -0.33
LIG1-211ENST00000596457 TMEM67Q5HYA8 995 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 CCDC174Q6PII3 467 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 SH3TC2Q8TF17 1288 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 RAVER2Q9HCJ3 691 aaKnown RBP12.99□□□□□ -0.33
LIG1-211ENST00000596457 IVNS1ABPQ9Y6Y0 642 aa12.99□□□□□ -0.33
LIG1-211ENST00000596457 ZNFX1Q9P2E3 1918 aaKnown RBP12.98□□□□□ -0.33
LIG1-211ENST00000596457 ADCY3O60266 1144 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 PDHBP11177 359 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 ZKSCAN1P17029 563 aaPredicted RBP12.98□□□□□ -0.33
LIG1-211ENST00000596457 CAPN2P17655 700 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 STAT3P40763 770 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 ANTXR2P58335 489 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 SEC23AQ15436 765 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 SNRNP48Q6IEG0 339 aaKnown RBP12.98□□□□□ -0.33
LIG1-211ENST00000596457 NFXL1Q6ZNB6 911 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 MB21D2Q8IYB1 491 aaPredicted RBP12.98□□□□□ -0.33
LIG1-211ENST00000596457 RASEFQ8IZ41 740 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 ZNF333Q96JL9 665 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 NUDT12Q9BQG2 462 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 LRRC2Q9BYS8 371 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 UBA5Q9GZZ9 404 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 SENP2Q9HC62 589 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 ADAMTS5Q9UNA0 930 aa12.98□□□□□ -0.33
LIG1-211ENST00000596457 ELNP15502 786 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 GRK4P32298 578 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 MCM5P33992 734 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 COL9A3Q14050 684 aaPredicted RBP12.97□□□□□ -0.33
LIG1-211ENST00000596457 ADCK5Q3MIX3 580 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 REPS2Q8NFH8 660 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 ANKS1AQ92625 1134 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 NEK1Q96PY6 1258 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 CPVLQ9H3G5 476 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 GPHNQ9NQX3 736 aaPredicted RBP12.97□□□□□ -0.33
LIG1-211ENST00000596457 GJD2Q9UKL4 321 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 PRR12Q9ULL5 1215 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 SZT2Q5T011 3432 aa12.97□□□□□ -0.33
LIG1-211ENST00000596457 MKI67P46013 3256 aaKnown RBP12.96□□□□□ -0.33
LIG1-211ENST00000596457 SLC15A5A6NIM6 579 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 DHX16O60231 1041 aaKnown RBP12.96□□□□□ -0.33
LIG1-211ENST00000596457 SLC25A27O95847 323 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 PARP1P09874 1014 aaKnown RBP12.96□□□□□ -0.33
LIG1-211ENST00000596457 CPA1P15085 419 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 PTPREP23469 700 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 ZNF543Q08ER8 600 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 SYDE2Q5VT97 1194 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 DPP9Q86TI2 863 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 RIOX2Q8IUF8 465 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 NUP133Q8WUM0 1156 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 AGBL1Q96MI9 1066 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 TCEANC2Q96MN5 208 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 MMP19Q99542 508 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 MROH8Q9H579 483 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 SLC38A10Q9HBR0 1119 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 VAT1LQ9HCJ6 419 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 HOMER2Q9NSB8 354 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 GTF3C3Q9Y5Q9 886 aa12.96□□□□□ -0.33
LIG1-211ENST00000596457 CCDC69A6NI79 296 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 PLA2G6O60733 806 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 ALAS1P13196 640 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 HSPA4P34932 840 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 RGS2P41220 211 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 MAP2K5Q13163 448 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 KRT32Q14532 448 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 MORN1Q5T089 497 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 GPATCH4Q5T3I0 446 aaKnown RBP12.95□□□□□ -0.34
LIG1-211ENST00000596457 CATIPQ7Z7H3 387 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 RAB11FIP4Q86YS3 637 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 SLAIN1Q8ND83 568 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 SHCBP1Q8NEM2 672 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 IGDCC4Q8TDY8 1250 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 SOCS4Q8WXH5 440 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 JAKMIP1Q96N16 626 aaKnown RBP12.95□□□□□ -0.34
LIG1-211ENST00000596457 TEX13BQ9BXU2 312 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 USP26Q9BXU7 913 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 ZNF214Q9UL59 606 aaPredicted RBP12.95□□□□□ -0.34
LIG1-211ENST00000596457 RIPK3Q9Y572 518 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 SNX14Q9Y5W7 946 aa12.95□□□□□ -0.34
LIG1-211ENST00000596457 MYH6P13533 1939 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 SNHG28P0DPA3 235 aa12.94□□□□□ -0.34
LIG1-211ENST00000596457 FDX1P10109 184 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms