RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 H3BQF6 201 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ZBTB22O15209 634 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 PRPF3O43395 683 aaKnown RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 EIF3JO75822 258 aaKnown RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ZBTB7AO95365 584 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 POLD1P28340 1107 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 CASP1P29466 404 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 FXR1P51114 621 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 SEC23AQ15436 765 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 WHAMMP3Q1A5X7 153 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 BEND6Q5SZJ8 279 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 SLC35F6Q8N357 371 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ATRIPQ8WXE1 791 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ESR2Q92731 530 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 NAPGQ99747 312 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 GBP3Q9H0R5 595 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ANKIB1Q9P2G1 1089 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 MYO1AQ9UBC5 1043 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 LIMA1Q9UHB6 759 aaKnown RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 ADAM21Q9UKJ8 722 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 CTNND2Q9UQB3 1225 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 TNKSO95271 1327 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 TAF1P21675 1872 aa12.24□□□□□ -0.45
VPS4B-206ENST00000591475 SNAP23O00161 211 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 SPAG1Q07617 926 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 TRIM14Q14142 442 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 PKN1Q16512 942 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 C2CD5Q86YS7 1000 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 SMYD4Q8IYR2 804 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 ANKRD20A12PQ8NF67 263 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 SHISA4Q96DD7 197 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 CWC15Q9P013 229 aaKnown RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 XDHP47989 1333 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 ANKRD31Q8N7Z5 1873 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 DUOX1Q9NRD9 1551 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 MINDY4BA8MYZ0 360 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 N4BP3O15049 544 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 TUBBP07437 444 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 RAD51AP2Q09MP3 1159 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 KRT31Q15323 416 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 ZSCAN26Q16670 478 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 CAVIN4Q5BKX8 364 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 EARS2Q5JPH6 523 aaKnown RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 STYK1Q6J9G0 422 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 CYP26C1Q6V0L0 522 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 MIGA1Q8NAN2 632 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 ACRBPQ8NEB7 543 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 PNKPQ96T60 521 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 PYM1Q9BRP8 204 aaKnown RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 TMX4Q9H1E5 349 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 RBM28Q9NW13 759 aaKnown RBP12.23□□□□□ -0.45
VPS4B-206ENST00000591475 LRP2BPQ9P2M1 347 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 ANAPC4Q9UJX5 808 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 LEMD3Q9Y2U8 911 aa12.23□□□□□ -0.45
VPS4B-206ENST00000591475 GOLGB1Q14789 3259 aaKnown RBP12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CTAGE15A4D2H0 777 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 PPEF1O14829 653 aaPredicted RBP12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CTAGE8P0CG41 777 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CCT6AP40227 531 aaKnown RBP12.22□□□□□ -0.45
VPS4B-206ENST00000591475 LMAN1P49257 510 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 MCM6Q14566 821 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 ZNF174Q15697 407 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 TTC38Q5R3I4 469 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 RRAGBQ5VZM2 374 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CATIPQ7Z7H3 387 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CTAGE6Q86UF2 777 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 CTAGE4Q8IX94 777 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 SP8Q8IXZ3 490 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 IQUBQ8NA54 791 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 GOLGA5Q8TBA6 731 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 PDE11AQ9HCR9 933 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 ABHD10Q9NUJ1 306 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 RWDD2AQ9UIY3 292 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 ZNF804BA4D1E1 1349 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 C10orf71Q711Q0 1435 aa12.22□□□□□ -0.45
VPS4B-206ENST00000591475 LRRC10BA6NIK2 292 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 PRDM1O75626 825 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 CALM1P0DP23 149 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 CALM2P0DP24 149 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 CALM3P0DP25 149 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 CAPN2P17655 700 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 CYP7A1P22680 504 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 COPB1P53618 953 aaKnown RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 GYS2P54840 703 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ERVK-24P63145 666 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ATP2C1P98194 919 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 SLC20A2Q08357 652 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 FUT2Q10981 343 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ZNF622Q969S3 477 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ZSCAN10Q96SZ4 725 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 NUP88Q99567 741 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ABCB6Q9NP58 842 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 L1RE1Q9UN81 338 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 ATP6V0A2Q9Y487 856 aa12.21□□□□□ -0.45
VPS4B-206ENST00000591475 BAZ2AQ9UIF9 1905 aaKnown RBP12.21□□□□□ -0.45
VPS4B-206ENST00000591475 GTPBP6O43824 516 aaPredicted RBP12.21□□□□□ -0.46
VPS4B-206ENST00000591475 RHOXF2BP0C7M4 288 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 BCAMP50895 628 aa12.21□□□□□ -0.46
VPS4B-206ENST00000591475 PAK1Q13153 545 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms