RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 KLHL23Q8NBE8 558 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 NLGN2Q8NFZ4 835 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 ZCRB1Q8TBF4 217 aaKnown RBP7.31□□□□□ -1.24
SMAD4-208ENST00000589706 KLHDC7BQ96G42 594 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 CARD10Q9BWT7 1032 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 BRINP2Q9C0B6 783 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 IFT57Q9NWB7 429 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 TMEM260Q9NX78 707 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 GMIPQ9P107 970 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 NXF1Q9UBU9 619 aaKnown RBP7.31□□□□□ -1.24
SMAD4-208ENST00000589706 KIAA0232Q92628 1395 aa7.31□□□□□ -1.24
SMAD4-208ENST00000589706 SBF2Q86WG5 1849 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 hCG_2014768A0A024R1R8 64 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 SLC22A31A6NKX4 558 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 DCDC2CA8MYV0 355 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 B2RBV5 119 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 PDE4BQ07343 736 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 SQSTM1Q13501 440 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 SUZ12Q15022 739 aaKnown RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 KIF4BQ2VIQ3 1234 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 MSL1Q68DK7 614 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 INTS3Q68E01 1043 aaKnown RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 OVOS1Q6IE37 1185 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 CYFIP1Q7L576 1253 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 JMYQ8N9B5 988 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 ST13P5Q8NFI4 369 aaPredicted RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 THAP3Q8WTV1 239 aaPredicted RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 ATG4CQ96DT6 458 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 WDR89Q96FK6 387 aaPredicted RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 PNNQ9H307 717 aaKnown RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 PRKAB1Q9Y478 270 aa7.3□□□□□ -1.24
SMAD4-208ENST00000589706 GOLGB1Q14789 3259 aaKnown RBP7.3□□□□□ -1.24
SMAD4-208ENST00000589706 KDM2BQ8NHM5 1336 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 OVOS2A0A0G2JMS6 1433 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 OVOS2A0A0J9YW53 1432 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 OVOS2Q6IE36 1432 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 M0R082 166 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 PPP1R12AO14974 1030 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 DNAJC6O75061 913 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 NME1P15531 152 aaKnown RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 C2orf27AQ580R0 203 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ARSHQ5FYA8 562 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 TMEM201Q5SNT2 666 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 L1TD1Q5T7N2 865 aaKnown RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 UNC5AQ6ZN44 842 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 C8orf86Q6ZUL3 223 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 SPATC1Q76KD6 591 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 KIAA0907Q7Z7F0 614 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 SMAP1Q8IYB5 467 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ZNF417Q8TAU3 575 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ZNF587Q96SQ5 575 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 COL25A1Q9BXS0 654 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 SPC25Q9HBM1 224 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 PFDN2Q9UHV9 154 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ZMYM5Q9UJ78 669 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 LEMD3Q9Y2U8 911 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 THRAP3Q9Y2W1 955 aaKnown RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 CLTCL1P53675 1640 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ABCC11Q96J66 1382 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 PEAK1Q9H792 1746 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 TRPM3Q9HCF6 1732 aaPredicted RBP7.29□□□□□ -1.24
SMAD4-208ENST00000589706 KIF1BO60333 1816 aa7.29□□□□□ -1.24
SMAD4-208ENST00000589706 ALS2Q96Q42 1657 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 RPGRIP1LQ68CZ1 1315 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 SSH2Q76I76 1423 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 CRYBG1Q9Y4K1 1723 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 UPK3BL1B0FP48 263 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 UPK3BL2E5RIL1 263 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 TNFRSF10CO14798 259 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 TM4SF5O14894 197 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 DIAPH1O60610 1272 aaKnown RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 DNAJA2O60884 412 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 ACRP10323 421 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 NLRP12P59046 1061 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 SRSF11Q05519 484 aaKnown RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 FAM50AQ14320 339 aaKnown RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 SETDB1Q15047 1291 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 ZYXQ15942 572 aaKnown RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 RNFT1Q5M7Z0 435 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 HP1BP3Q5SSJ5 553 aaPredicted RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 CDCP2Q5VXM1 449 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 TMEM132EQ6IEE7 984 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 MRM1Q6IN84 353 aaKnown RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 C16orf86Q6ZW13 317 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 NLRC3Q7RTR2 1065 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 C12orf40Q86WS4 652 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 TEX2Q8IWB9 1127 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 NPAS3Q8IXF0 933 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 ZNF669Q96BR6 464 aaPredicted RBP7.28□□□□□ -1.24
SMAD4-208ENST00000589706 USP26Q9BXU7 913 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 TMX1Q9H3N1 280 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 CNNM2Q9H8M5 875 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 ADAM30Q9UKF2 790 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 CSADQ9Y600 493 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 ADCY9O60503 1353 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 GPRASP1Q5JY77 1395 aa7.28□□□□□ -1.24
SMAD4-208ENST00000589706 LTBP3Q9NS15 1303 aa7.27□□□□□ -1.24
SMAD4-208ENST00000589706 IFT172Q9UG01 1749 aa7.27□□□□□ -1.25
SMAD4-208ENST00000589706 LOC100289279A0A1B0GTE1 492 aa7.27□□□□□ -1.25
SMAD4-208ENST00000589706 PRAMEF27A3QJZ7 478 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms