RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 NTRK3Q16288 839 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 RILPL1Q5EBL4 403 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 GALNT17Q6IS24 598 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 HEATR3Q7Z4Q2 680 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 METTL16Q86W50 562 aaKnown RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 HOMER1Q86YM7 354 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 GMCL1P1Q8NEA9 526 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 ZBED3Q96IU2 234 aaPredicted RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 KRTAP3-3Q9BYR6 98 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 KRTAP3-2Q9BYR7 98 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 GLT8D2Q9H1C3 349 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 FOXP1Q9H334 677 aaPredicted RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 C6orf50Q9HD87 102 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 PICK1Q9NRD5 415 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 ZBTB21Q9ULJ3 1066 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 CNPY2Q9Y2B0 182 aa7.12□□□□□ -1.27
LIG3-206ENST00000586058 CTDP1Q9Y5B0 961 aaPredicted RBP7.12□□□□□ -1.27
LIG3-206ENST00000586058 FRMPD2Q68DX3 1309 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 IGKV6D-41A0A0C4DH26 115 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 CCDC194A0A1B0GVG4 234 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 PALM3A6NDB9 673 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 TRAK2O60296 914 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 DDNO94850 711 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 BMP15O95972 392 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 FDPSP14324 419 aaKnown RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 CAP2P40123 477 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 STAT2P52630 851 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 USP14P54578 494 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 UBE2HP62256 183 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 KIF23Q02241 960 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 DNM1Q05193 864 aaKnown RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 ZNF543Q08ER8 600 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 RESTQ13127 1097 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 SEPT2Q15019 361 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 PFKFB3Q16875 520 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 KLHL40Q2TBA0 621 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 SLFN13Q68D06 897 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 PPP1R18Q6NYC8 613 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 CCDC73Q6ZRK6 1079 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 USP50Q70EL3 339 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 SH3BP5LQ7L8J4 393 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 NBPF11Q86T75 865 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 PNMA8AQ86V59 439 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 NOSTRINQ8IVI9 506 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 ZFPM1Q8IX07 1006 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 DIS3L2Q8IYB7 885 aaKnown RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 CMTR1Q8N1G2 835 aaKnown RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 TMEM87AQ8NBN3 555 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 KCNG4Q8TDN1 519 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 PIBF1Q8WXW3 757 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 CCDC34Q96HJ3 373 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 DEFB129Q9H1M3 183 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 DNAJC18Q9H819 358 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 GPCPD1Q9NPB8 672 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 MAD2L2Q9UI95 211 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 ZDHHC9Q9Y397 364 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 CSADQ9Y600 493 aa7.11□□□□□ -1.27
LIG3-206ENST00000586058 V9GY48 417 aaPredicted RBP7.11□□□□□ -1.27
LIG3-206ENST00000586058 A0A0G2JMZ2 1700 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 PPP1R12BO60237 982 aaPredicted RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 CTNND1O60716 968 aaKnown RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 YEATS4O95619 227 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 GOLGA8HP0CJ92 632 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 BMP3P12645 472 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 EPHX2P34913 555 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 IREB2P48200 963 aaKnown RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 NOVP48745 357 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 MYSM1Q5VVJ2 828 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 MCTP2Q6DN12 878 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 USP17L2Q6R6M4 530 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 MIGA2Q7L4E1 593 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 FAM160B2Q86V87 743 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 CLEC10AQ8IUN9 316 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 SRBD1Q8N5C6 995 aaKnown RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 NKX2-3Q8TAU0 364 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 CHURC1Q8WUH1 139 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 LPAR1Q92633 364 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 MKL1Q969V6 931 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 GMCL1Q96IK5 515 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 ZFP91Q96JP5 570 aaPredicted RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 WRNIP1Q96S55 665 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 FAM217BQ9NTX9 383 aaPredicted RBP7.1□□□□□ -1.27
LIG3-206ENST00000586058 POLR3EQ9NVU0 708 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 VPS54Q9P1Q0 977 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 PNMA2Q9UL42 364 aa7.1□□□□□ -1.27
LIG3-206ENST00000586058 PNMA6FA0A0J9YX94 578 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 SHTN1A0MZ66 631 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 GLTPD2A6NH11 291 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 USP17L5A8MUK1 530 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 ZBTB5O15062 677 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 LETM1O95202 739 aaPredicted RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 SNHG28P0DPA3 235 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 EPS15P42566 896 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 ME1P48163 572 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 ADCY7P51828 1080 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 PRELPP51888 382 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 CEBPZQ03701 1054 aaKnown RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 TTLL12Q14166 644 aaPredicted RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 ZRSR1Q15695 479 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms