RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 OLFML2BQ68BL8 750 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 DIS3LQ8TF46 1054 aaKnown RBP17.95■□□□□ 0.46
CLIP3-202ENST00000585466 CWC22Q9HCG8 908 aaKnown RBP17.95■□□□□ 0.46
CLIP3-202ENST00000585466 FEM1BQ9UK73 627 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 OGDHLQ9ULD0 1010 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 PCP11498 1178 aaKnown RBP17.94■□□□□ 0.46
CLIP3-202ENST00000585466 CYBAP13498 195 aa17.94■□□□□ 0.46
CLIP3-202ENST00000585466 CAPN2P17655 700 aa17.94■□□□□ 0.46
CLIP3-202ENST00000585466 CHMLP26374 656 aa17.94■□□□□ 0.46
CLIP3-202ENST00000585466 CYP2C19P33261 490 aa17.94■□□□□ 0.46
CLIP3-202ENST00000585466 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLIP3-202ENST00000585466 STX8Q9UNK0 236 aa17.94■□□□□ 0.46
CLIP3-202ENST00000585466 TMEM232C9JQI7 657 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 PLA2G6O60733 806 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 TFRCP02786 760 aaKnown RBP17.93■□□□□ 0.46
CLIP3-202ENST00000585466 MCCP23508 829 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 RRP12Q5JTH9 1297 aaKnown RBP17.93■□□□□ 0.46
CLIP3-202ENST00000585466 PPP4R3BQ5MIZ7 849 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 KIFC2Q96AC6 838 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 TMEM47Q9BQJ4 181 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 TEX13BQ9BXU2 312 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 ZNF536O15090 1300 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 RAD50Q92878 1312 aa17.93■□□□□ 0.46
CLIP3-202ENST00000585466 LCTP09848 1927 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 PGK2P07205 417 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 FCER1AP12319 257 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 SLC1A4P43007 532 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 ZNF792Q3KQV3 632 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 SNRNP48Q6IEG0 339 aaKnown RBP17.92■□□□□ 0.46
CLIP3-202ENST00000585466 MFSD6Q6ZSS7 791 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 DPP9Q86TI2 863 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 SKAP1Q86WV1 359 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 ANKLE1Q8NAG6 615 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 MAML3Q96JK9 1138 aa17.92■□□□□ 0.46
CLIP3-202ENST00000585466 RAVER2Q9HCJ3 691 aaKnown RBP17.92■□□□□ 0.46
CLIP3-202ENST00000585466 DNAJC25-GNG10A0A024R161 153 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 COPB2P35606 906 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 STAT2P52630 851 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 MFSD14CQ5VZR4 134 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 KCTD1Q719H9 257 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 CHMP4CQ96CF2 233 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 PAWRQ96IZ0 340 aaKnown RBP17.91■□□□□ 0.46
CLIP3-202ENST00000585466 MMP19Q99542 508 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 TOMM22Q9NS69 142 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 MCM3APO60318 1980 aa17.91■□□□□ 0.46
CLIP3-202ENST00000585466 ZNF213O14771 459 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 TOP1P11387 765 aaKnown RBP17.9■□□□□ 0.46
CLIP3-202ENST00000585466 OAZ1P54368 228 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 PTH1RQ03431 593 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 FAM160B2Q86V87 743 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 CPXCR1Q8N123 301 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 FGD4Q96M96 766 aa17.9■□□□□ 0.46
CLIP3-202ENST00000585466 RNF41Q9H4P4 317 aaPredicted RBP17.9■□□□□ 0.46
CLIP3-202ENST00000585466 SGSM2O43147 1006 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 ZBED4O75132 1171 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 SLC34A2O95436 690 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 SNHG28P0DPA3 235 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 COL6A1P12109 1028 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 TTBK2Q6IQ55 1244 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 BTNL9Q6UXG8 535 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 DCAF4Q8WV16 495 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 PRR12Q9ULL5 1215 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 DIS3Q9Y2L1 958 aaKnown RBP17.89■□□□□ 0.45
CLIP3-202ENST00000585466 PFASO15067 1338 aa17.89■□□□□ 0.45
CLIP3-202ENST00000585466 KDM4AO75164 1064 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 PDHBP11177 359 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 KCTD2Q14681 263 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 PRAMEF19Q5SWL8 479 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 CHURC1Q8WUH1 139 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 ANKS1AQ92625 1134 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 ESR2Q92731 530 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 TTC14Q96N46 770 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 ZKSCAN3Q9BRR0 538 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 DDX20Q9UHI6 824 aaKnown RBP17.88■□□□□ 0.45
CLIP3-202ENST00000585466 TAF6LQ9Y6J9 622 aa17.88■□□□□ 0.45
CLIP3-202ENST00000585466 B4E1Z4 1266 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 H0YGN5 161 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 FDX1P10109 184 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 TAL1P17542 331 aaPredicted RBP17.87■□□□□ 0.45
CLIP3-202ENST00000585466 NT5C2P49902 561 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 SNAP25P60880 206 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 IMMTQ16891 758 aaKnown RBP17.87■□□□□ 0.45
CLIP3-202ENST00000585466 AGBL1Q96MI9 1066 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 CTNNA3Q9UI47 895 aa17.87■□□□□ 0.45
CLIP3-202ENST00000585466 LRRC37A2A6NM11 1700 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 RANBP2P49792 3224 aaKnown RBP17.86■□□□□ 0.45
CLIP3-202ENST00000585466 CENPQQ7L2Z9 268 aaPredicted RBP17.86■□□□□ 0.45
CLIP3-202ENST00000585466 NECAB2Q7Z6G3 386 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 DGKHQ86XP1 1220 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 ENAHQ8N8S7 591 aaPredicted RBP17.86■□□□□ 0.45
CLIP3-202ENST00000585466 CHST13Q8NET6 341 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 TINF2Q9BSI4 451 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 HTATIP2Q9BUP3 242 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 RANBP17Q9H2T7 1088 aaKnown RBP17.86■□□□□ 0.45
CLIP3-202ENST00000585466 SLC5A4Q9NY91 659 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 ZSWIM5Q9P217 1185 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 MTMR7Q9Y216 660 aa17.86■□□□□ 0.45
CLIP3-202ENST00000585466 SEPT4O43236 478 aa17.85■□□□□ 0.45
CLIP3-202ENST00000585466 CYP21A2P08686 494 aa17.85■□□□□ 0.45
CLIP3-202ENST00000585466 ZNF865P0CJ78 1059 aaPredicted RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms