RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 NSUN7Q8NE18 718 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 PHOX2BQ99453 314 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 GLIS2Q9BZE0 524 aaPredicted RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 CWC22Q9HCG8 908 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 DAXXQ9UER7 740 aaPredicted RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 STX8Q9UNK0 236 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 USP2O75604 605 aaPredicted RBP11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 EEF2P13639 858 aaKnown RBP11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 CDC27P30260 824 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 INPP5BP32019 993 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 STK3Q13188 491 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 RTN1Q16799 776 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 LAPTM4BQ86VI4 370 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 MICU3Q86XE3 530 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 SCYL3Q8IZE3 742 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 GMCL1P1Q8NEA9 526 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 PXYLP1Q8TE99 480 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 MYL10Q9BUA6 226 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 NCOA5Q9HCD5 579 aaKnown RBP11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 RBM28Q9NW13 759 aaKnown RBP11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 CLIP2Q9UDT6 1046 aa11.5□□□□□ -0.57
SMCHD1-212ENST00000585229 CCDC196A0A1B0GTZ2 297 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 A0A1W2PRG0 241 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 PALM3A6NDB9 673 aaPredicted RBP11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 UNCXA6NJT0 531 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 IRF6O14896 467 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 DHX16O60231 1041 aaKnown RBP11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 IFNAR1P17181 557 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 RXRAP19793 462 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 NF2P35240 595 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 CCT2P78371 535 aaKnown RBP11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 HMGN5P82970 282 aaKnown RBP11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 FUT2Q10981 343 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 MMRN1Q13201 1228 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 TMTC3Q6ZXV5 915 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 METTL3Q86U44 580 aaKnown RBP11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 RGS22Q8NE09 1264 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 CCDC102AQ96A19 550 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 WRNIP1Q96S55 665 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 WDR18Q9BV38 432 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 ARHGEF10LQ9HCE6 1279 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 MAD2L2Q9UI95 211 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 TMX2Q9Y320 296 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 STK36Q9NRP7 1315 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 LOC285556D6RIA3 1793 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 PARP14Q460N5 1801 aa11.49□□□□□ -0.57
SMCHD1-212ENST00000585229 PTPDC1A2A3K4 754 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 PPP1R12BO60237 982 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 CDKL5O76039 1030 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 PDHBP11177 359 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 SMARCA1P28370 1054 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 ADD1P35611 737 aaKnown RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 IREB2P48200 963 aaKnown RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 GNAQP50148 359 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 RAB3GAP1Q15042 981 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 ASPRV1Q53RT3 343 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 MAP1SQ66K74 1059 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 DLK2Q6UY11 383 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 NBPF11Q86T75 865 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 RAB11FIP4Q86YS3 637 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 LRRC47Q8N1G4 583 aaKnown RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 CTCFLQ8NI51 663 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 DCAF4Q8WV16 495 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 ZFRQ96KR1 1074 aaKnown RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 LZTS2Q9BRK4 669 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 SH2D4AQ9H788 454 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 NAP1L2Q9ULW6 460 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 SMC3Q9UQE7 1217 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 SNCAIPQ9Y6H5 919 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 CNTNAP5Q8WYK1 1306 aa11.48□□□□□ -0.57
SMCHD1-212ENST00000585229 USP17L5A8MUK1 530 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 JAK2O60674 1132 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 HSP90AA1P07900 732 aaKnown RBP11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 PTPRAP18433 802 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 GJB2P29033 226 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 KIF5BP33176 963 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 FKBP1BP68106 108 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 ZNF543Q08ER8 600 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 CPLX2Q6PUV4 134 aaKnown RBP11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 NUP133Q8WUM0 1156 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 GMCL1Q96IK5 515 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 RNF26Q9BY78 433 aaPredicted RBP11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 KIAA1683Q9H0B3 1180 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 VCPKMTQ9H867 229 aa11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.47□□□□□ -0.57
SMCHD1-212ENST00000585229 CPLX1O14810 134 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 PLEKHA8P1O95397 391 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 FMNL1O95466 1100 aaPredicted RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ITGBL1O95965 494 aaPredicted RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 NDUFB10O96000 172 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 PARP1P09874 1014 aaKnown RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 PDIA4P13667 645 aaKnown RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 FDPSP14324 419 aaKnown RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 ECE1P42892 770 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 VGLL4Q14135 290 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 SLC35G1Q2M3R5 365 aa11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 GPATCH4Q5T3I0 446 aaKnown RBP11.46□□□□□ -0.57
SMCHD1-212ENST00000585229 LDLRAD1Q5T700 205 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms