RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SAGE1Q9NXZ1 904 aa19.9■□□□□ 0.78
NUP88-210ENST00000574867 KLRF2D3W0D1 207 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 CA12O43570 354 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 FDX1P10109 184 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 CYP2C8P10632 490 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 MCM2P49736 904 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 RAB11FIP4Q86YS3 637 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 STAG2Q8N3U4 1231 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 TPCN1Q9ULQ1 816 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 HPS5Q9UPZ3 1129 aa19.89■□□□□ 0.77
NUP88-210ENST00000574867 GCLCP48506 637 aaPredicted RBP19.88■□□□□ 0.77
NUP88-210ENST00000574867 TTBK2Q6IQ55 1244 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 CCDC144CPQ8IYA2 1237 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 MB21D1Q8N884 522 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 P2RX7Q99572 595 aaKnown RBP19.88■□□□□ 0.77
NUP88-210ENST00000574867 LIMCH1Q9UPQ0 1083 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 SYDE2Q5VT97 1194 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 KIFC2Q96AC6 838 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 BEGAINQ9BUH8 593 aa19.88■□□□□ 0.77
NUP88-210ENST00000574867 ADGRA2Q96PE1 1338 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 SMARCA1P28370 1054 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 CRHR2Q13324 411 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 TMTC3Q6ZXV5 915 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 NOL8Q76FK4 1167 aaKnown RBP19.87■□□□□ 0.77
NUP88-210ENST00000574867 ATG4CQ96DT6 458 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 LARP6Q9BRS8 491 aaKnown RBP19.87■□□□□ 0.77
NUP88-210ENST00000574867 RNF186Q9NXI6 227 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 PRR12Q9ULL5 1215 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 ADAMTS5Q9UNA0 930 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 SLC16A2P36021 539 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 JMYQ8N9B5 988 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 ZSCAN31Q96LW9 406 aaPredicted RBP19.87■□□□□ 0.77
NUP88-210ENST00000574867 SPZ1Q9BXG8 430 aa19.87■□□□□ 0.77
NUP88-210ENST00000574867 SLKQ9H2G2 1235 aaPredicted RBP19.87■□□□□ 0.77
NUP88-210ENST00000574867 VWA5AO00534 786 aa19.86■□□□□ 0.77
NUP88-210ENST00000574867 TLR2O60603 784 aa19.86■□□□□ 0.77
NUP88-210ENST00000574867 PFKFB2O60825 505 aa19.86■□□□□ 0.77
NUP88-210ENST00000574867 SAMD1Q6SPF0 538 aaPredicted RBP19.86■□□□□ 0.77
NUP88-210ENST00000574867 SH2B1Q9NRF2 756 aaPredicted RBP19.86■□□□□ 0.77
NUP88-210ENST00000574867 COL11A1P12107 1806 aaPredicted RBP19.86■□□□□ 0.77
NUP88-210ENST00000574867 UBA5Q9GZZ9 404 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 RABGAP1Q9Y3P9 1069 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 DHX16O60231 1041 aaKnown RBP19.85■□□□□ 0.77
NUP88-210ENST00000574867 ZBED4O75132 1171 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 TRPA1O75762 1119 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 PLEKHA8P1O95397 391 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 STK3Q13188 491 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 ME3Q16798 604 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 ADGRF4Q8IZF3 695 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 RANBP17Q9H2T7 1088 aaKnown RBP19.85■□□□□ 0.77
NUP88-210ENST00000574867 RIOX1Q9H6W3 641 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 SLC38A10Q9HBR0 1119 aa19.85■□□□□ 0.77
NUP88-210ENST00000574867 FAM217BQ9NTX9 383 aaPredicted RBP19.85■□□□□ 0.77
NUP88-210ENST00000574867 CTDP1Q9Y5B0 961 aaPredicted RBP19.85■□□□□ 0.77
NUP88-210ENST00000574867 CDC27P30260 824 aa19.84■□□□□ 0.77
NUP88-210ENST00000574867 GTF3C6Q969F1 213 aa19.84■□□□□ 0.77
NUP88-210ENST00000574867 CPVLQ9H3G5 476 aa19.84■□□□□ 0.77
NUP88-210ENST00000574867 WBP1LQ9NX94 342 aa19.84■□□□□ 0.77
NUP88-210ENST00000574867 OAZ1P54368 228 aa19.83■□□□□ 0.77
NUP88-210ENST00000574867 CCT2P78371 535 aaKnown RBP19.83■□□□□ 0.77
NUP88-210ENST00000574867 FAM110CQ1W6H9 321 aa19.83■□□□□ 0.77
NUP88-210ENST00000574867 CPLX2Q6PUV4 134 aaKnown RBP19.83■□□□□ 0.77
NUP88-210ENST00000574867 MORF4L1Q9UBU8 362 aa19.83■□□□□ 0.77
NUP88-210ENST00000574867 PNMA2Q9UL42 364 aa19.83■□□□□ 0.77
NUP88-210ENST00000574867 CPLX1O14810 134 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 CD2BP2O95400 341 aaKnown RBP19.83■□□□□ 0.76
NUP88-210ENST00000574867 LARGE1O95461 756 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 SCRN1Q12765 414 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 SRBD1Q8N5C6 995 aaKnown RBP19.83■□□□□ 0.76
NUP88-210ENST00000574867 REPS2Q8NFH8 660 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 PAGR1Q9BTK6 254 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 JMJD4Q9H9V9 463 aa19.83■□□□□ 0.76
NUP88-210ENST00000574867 NCOA5Q9HCD5 579 aaKnown RBP19.83■□□□□ 0.76
NUP88-210ENST00000574867 CEP350Q5VT06 3117 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 ATP2A1O14983 1001 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 CYTH3O43739 400 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 BCRP11274 1271 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 ADD1P35611 737 aaKnown RBP19.82■□□□□ 0.76
NUP88-210ENST00000574867 CDC37Q16543 378 aaPredicted RBP19.82■□□□□ 0.76
NUP88-210ENST00000574867 C17orf99Q6UX52 265 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 NBPF11Q86T75 865 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 MTMR8Q96EF0 704 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 RBPJLQ9UBG7 517 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 CNTNAP5Q8WYK1 1306 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 CDKL5O76039 1030 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 IFNAR1P17181 557 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 POTEEQ6S8J3 1075 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 ANKRD13CQ8N6S4 541 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 CPA4Q9UI42 421 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 MYH6P13533 1939 aa19.82■□□□□ 0.76
NUP88-210ENST00000574867 CNMDO75829 334 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 TBC1D8O95759 1140 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 ERVK-9P63128 1117 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 ERVK-24P63145 666 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 FUT2Q10981 343 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 TMEM132BQ14DG7 1078 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 SLC35G1Q2M3R5 365 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 NOM1Q5C9Z4 860 aaKnown RBP19.81■□□□□ 0.76
NUP88-210ENST00000574867 GPRC5AQ8NFJ5 357 aa19.81■□□□□ 0.76
NUP88-210ENST00000574867 SNX21Q969T3 373 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms