RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 USP17L19D6RCP7 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L20D6RJB6 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 VCAM1P19320 739 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 USP17L24Q0WX57 530 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 CLEC10AQ8IUN9 316 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 ANKLE1Q8NAG6 615 aa24.14■■□□□ 1.45
VPS53-210ENST00000571456 TNKSO95271 1327 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 F5H6K3 240 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 SYN1P17600 705 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 KLRC3Q07444 240 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 RCSD1Q6JBY9 416 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 RASEFQ8IZ41 740 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 GMCL1Q96IK5 515 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 UBE2OQ9C0C9 1292 aaKnown RBP24.13■■□□□ 1.45
VPS53-210ENST00000571456 UPF2Q9HAU5 1272 aaKnown RBP24.13■■□□□ 1.45
VPS53-210ENST00000571456 PRDM6Q9NQX0 595 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 SNX14Q9Y5W7 946 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 TAF6LQ9Y6J9 622 aa24.13■■□□□ 1.45
VPS53-210ENST00000571456 NMT2O60551 498 aa24.12■■□□□ 1.45
VPS53-210ENST00000571456 IRX3P78415 501 aaPredicted RBP24.12■■□□□ 1.45
VPS53-210ENST00000571456 ZYXQ15942 572 aaKnown RBP24.12■■□□□ 1.45
VPS53-210ENST00000571456 DHX32Q7L7V1 743 aaKnown RBP24.12■■□□□ 1.45
VPS53-210ENST00000571456 ENAHQ8N8S7 591 aaPredicted RBP24.12■■□□□ 1.45
VPS53-210ENST00000571456 TMEM47Q9BQJ4 181 aa24.12■■□□□ 1.45
VPS53-210ENST00000571456 TM6SF1Q9BZW5 370 aa24.12■■□□□ 1.45
VPS53-210ENST00000571456 TNPO2O14787 897 aaKnown RBP24.11■■□□□ 1.45
VPS53-210ENST00000571456 IFIT3O14879 490 aaKnown RBP24.11■■□□□ 1.45
VPS53-210ENST00000571456 GCLCP48506 637 aaPredicted RBP24.11■■□□□ 1.45
VPS53-210ENST00000571456 IFIT1BQ5T764 474 aaKnown RBP24.11■■□□□ 1.45
VPS53-210ENST00000571456 CYB5R4Q7L1T6 521 aa24.11■■□□□ 1.45
VPS53-210ENST00000571456 IL17RAQ96F46 866 aa24.11■■□□□ 1.45
VPS53-210ENST00000571456 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.11■■□□□ 1.45
VPS53-210ENST00000571456 KAT14Q9H8E8 782 aa24.11■■□□□ 1.45
VPS53-210ENST00000571456 LIFRP42702 1097 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 WTAPQ15007 396 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 SEC23AQ15436 765 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 TREML2Q5T2D2 321 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 CATSPERGQ6ZRH7 1159 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 DCAF4Q8WV16 495 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 HOXC10Q9NYD6 342 aa24.1■■□□□ 1.45
VPS53-210ENST00000571456 PRC1O43663 620 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 NDUFB10O96000 172 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 SLFN13Q68D06 897 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 BLOC1S2Q6QNY1 142 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 LBX2Q6XYB7 198 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 LRRC47Q8N1G4 583 aaKnown RBP24.09■■□□□ 1.45
VPS53-210ENST00000571456 IL27Q8NEV9 243 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 SMCR8Q8TEV9 937 aaPredicted RBP24.09■■□□□ 1.45
VPS53-210ENST00000571456 ZKSCAN3Q9BRR0 538 aa24.09■■□□□ 1.45
VPS53-210ENST00000571456 RPAP3Q9H6T3 665 aaPredicted RBP24.09■■□□□ 1.45
VPS53-210ENST00000571456 PLA2G6O60733 806 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 COG2Q14746 738 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 TMEM67Q5HYA8 995 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 FAM109BQ6ICB4 259 aaPredicted RBP24.08■■□□□ 1.45
VPS53-210ENST00000571456 FBXL16Q8N461 479 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 PNMA1Q8ND90 353 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 IGDCC4Q8TDY8 1250 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 JAKMIP1Q96N16 626 aaKnown RBP24.08■■□□□ 1.45
VPS53-210ENST00000571456 GUCD1Q96NT3 240 aa24.08■■□□□ 1.45
VPS53-210ENST00000571456 ASCC2Q9H1I8 757 aaPredicted RBP24.08■■□□□ 1.45
VPS53-210ENST00000571456 FDX1P10109 184 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 BMP3P12645 472 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 SLC1A4P43007 532 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 ANTXR2P58335 489 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 EXOSC10Q01780 885 aaKnown RBP24.07■■□□□ 1.44
VPS53-210ENST00000571456 TANGO6Q9C0B7 1094 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 FEM1BQ9UK73 627 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 PARP14Q460N5 1801 aa24.07■■□□□ 1.44
VPS53-210ENST00000571456 POTEB2H3BUK9 544 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 RAD21O60216 631 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 ADCK5Q3MIX3 580 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 GPATCH4Q5T3I0 446 aaKnown RBP24.06■■□□□ 1.44
VPS53-210ENST00000571456 SPICE1Q8N0Z3 855 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 MB21D1Q8N884 522 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 CHURC1Q8WUH1 139 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 COA7Q96BR5 231 aa24.06■■□□□ 1.44
VPS53-210ENST00000571456 SEC24BO95487 1268 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 SNHG28P0DPA3 235 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 FAM160B2Q86V87 743 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 SGMS1Q86VZ5 419 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 MAP3K14Q99558 947 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 C11orf49Q9H6J7 331 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 ZSWIM6Q9HCJ5 1215 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 CYP46A1Q9Y6A2 500 aa24.05■■□□□ 1.44
VPS53-210ENST00000571456 SH2B2O14492 632 aaPredicted RBP24.04■■□□□ 1.44
VPS53-210ENST00000571456 FLOT1O75955 427 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 CALM1P0DP23 149 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 CALM2P0DP24 149 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 CALM3P0DP25 149 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 CASTP20810 708 aaKnown RBP24.04■■□□□ 1.44
VPS53-210ENST00000571456 HERVK_113P62684 666 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 KIAA1755Q5JYT7 1200 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 FAM83BQ5T0W9 1011 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 RUFY3Q7L099 469 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 CATIPQ7Z7H3 387 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 PRPF38AQ8NAV1 312 aaKnown RBP24.04■■□□□ 1.44
VPS53-210ENST00000571456 RLFQ13129 1914 aa24.04■■□□□ 1.44
VPS53-210ENST00000571456 DDAH1O94760 285 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 PDHBP11177 359 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 RPS6KB1P23443 525 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms