RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 CALM2P0DP24 149 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 CALM3P0DP25 149 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 FBXL16Q8N461 479 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 SHCBP1Q8NEM2 672 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 COA7Q96BR5 231 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 TRIM47Q96LD4 638 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 ZSWIM6Q9HCJ5 1215 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 GPCPD1Q9NPB8 672 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 PNMA2Q9UL42 364 aa25.66■■□□□ 1.7
CLN3-234ENST00000568472 TNPO2O14787 897 aaKnown RBP25.65■■□□□ 1.7
CLN3-234ENST00000568472 DDAH1O94760 285 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 SEC24BO95487 1268 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 CASTP20810 708 aaKnown RBP25.65■■□□□ 1.7
CLN3-234ENST00000568472 RPS6KB1P23443 525 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 FGD1P98174 961 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 TROAPQ12815 778 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 TMEM132BQ14DG7 1078 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 SYDE2Q5VT97 1194 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 SYNE3Q6ZMZ3 975 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 OTOP1Q7RTM1 612 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 CHMP4CQ96CF2 233 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 IL17RAQ96F46 866 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 MROH8Q9H579 483 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 PRR12Q9ULL5 1215 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 TRIM17Q9Y577 477 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 CYP46A1Q9Y6A2 500 aa25.65■■□□□ 1.7
CLN3-234ENST00000568472 FRMPD2Q68DX3 1309 aaPredicted RBP25.64■■□□□ 1.7
CLN3-234ENST00000568472 STAT3P40763 770 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 PLS1Q14651 629 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 RUFY3Q7L099 469 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 ZNF654Q8IZM8 581 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 REPS2Q8NFH8 660 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 TEX13BQ9BXU2 312 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 ZNF214Q9UL59 606 aaPredicted RBP25.64■■□□□ 1.7
CLN3-234ENST00000568472 SLC12A7Q9Y666 1083 aa25.64■■□□□ 1.7
CLN3-234ENST00000568472 KIF5BP33176 963 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 COL9A3Q14050 684 aaPredicted RBP25.63■■□□□ 1.69
CLN3-234ENST00000568472 GRM4Q14833 912 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 TTBK2Q6IQ55 1244 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 RIOX2Q8IUF8 465 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 MOV10L1Q9BXT6 1211 aaKnown RBP25.63■■□□□ 1.69
CLN3-234ENST00000568472 ARHGAP39Q9C0H5 1083 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 UPF2Q9HAU5 1272 aaKnown RBP25.63■■□□□ 1.69
CLN3-234ENST00000568472 SENP2Q9HC62 589 aa25.63■■□□□ 1.69
CLN3-234ENST00000568472 CWC22Q9HCG8 908 aaKnown RBP25.63■■□□□ 1.69
CLN3-234ENST00000568472 PALM3A6NDB9 673 aaPredicted RBP25.62■■□□□ 1.69
CLN3-234ENST00000568472 RASGRP2Q7LDG7 609 aa25.62■■□□□ 1.69
CLN3-234ENST00000568472 CTCFLQ8NI51 663 aaPredicted RBP25.62■■□□□ 1.69
CLN3-234ENST00000568472 LRRC2Q9BYS8 371 aa25.62■■□□□ 1.69
CLN3-234ENST00000568472 GPHNQ9NQX3 736 aaPredicted RBP25.62■■□□□ 1.69
CLN3-234ENST00000568472 SRRDQ9UH36 339 aa25.62■■□□□ 1.69
CLN3-234ENST00000568472 RLFQ13129 1914 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 KLRF2D3W0D1 207 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 STRNO43815 780 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 PEX10O60683 326 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 GOLGA8HP0CJ92 632 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 CTGFP29279 349 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 SLC16A2P36021 539 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 GNAQP50148 359 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 PLEKHH3Q7Z736 793 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 PORCNQ9H237 461 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 RANBP17Q9H2T7 1088 aaKnown RBP25.61■■□□□ 1.69
CLN3-234ENST00000568472 MAD2L2Q9UI95 211 aa25.61■■□□□ 1.69
CLN3-234ENST00000568472 CASP8AP2Q9UKL3 1982 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 RCAN1P53805 252 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 COL13A1Q5TAT6 717 aaPredicted RBP25.6■■□□□ 1.69
CLN3-234ENST00000568472 FBXO46Q6PJ61 603 aaPredicted RBP25.6■■□□□ 1.69
CLN3-234ENST00000568472 NUP133Q8WUM0 1156 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 LZTS2Q9BRK4 669 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 AGXT2Q9BYV1 514 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 IVNS1ABPQ9Y6Y0 642 aa25.6■■□□□ 1.69
CLN3-234ENST00000568472 CPA1P15085 419 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 ERCC3P19447 782 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 SMARCA1P28370 1054 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 CAP1Q01518 475 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 TKFCQ3LXA3 575 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 SNRNP48Q6IEG0 339 aaKnown RBP25.59■■□□□ 1.69
CLN3-234ENST00000568472 Q6ZUG5 572 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 GPR142Q7Z601 462 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 ABRAQ8N0Z2 381 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 CPXCR1Q8N123 301 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 SOCS4Q8WXH5 440 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 TCEANC2Q96MN5 208 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 PTPN22Q9Y2R2 807 aa25.59■■□□□ 1.69
CLN3-234ENST00000568472 A0A0G2JMZ2 1700 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 PPP2R5BQ15173 497 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 APOA5Q6Q788 366 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 NCAPG2Q86XI2 1143 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 UBA5Q9GZZ9 404 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 RAVER2Q9HCJ3 691 aaKnown RBP25.58■■□□□ 1.69
CLN3-234ENST00000568472 FBXO40Q9UH90 709 aa25.58■■□□□ 1.69
CLN3-234ENST00000568472 SLC15A5A6NIM6 579 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 ICAM1P05362 532 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 IRF5Q13568 498 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 WDR78Q5VTH9 848 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 ADGRF4Q8IZF3 695 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 STAG2Q8N3U4 1231 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 FANCBQ8NB91 859 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 CHST13Q8NET6 341 aa25.57■■□□□ 1.68
CLN3-234ENST00000568472 NUDT12Q9BQG2 462 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms