RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLC10A4Q96EP9 437 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 CLMNQ96JQ2 1002 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 NUP88Q99567 741 aaPredicted RBP14.81□□□□□ -0.04
CLK3-214ENST00000564096 RIOX1Q9H6W3 641 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 BRMS1Q9HCU9 246 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.81□□□□□ -0.04
CLK3-214ENST00000564096 V9GY48 417 aaPredicted RBP14.81□□□□□ -0.04
CLK3-214ENST00000564096 ZBTB5O15062 677 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 SNAPC2Q13487 334 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 CDC37Q16543 378 aaPredicted RBP14.8□□□□□ -0.04
CLK3-214ENST00000564096 SH3D19Q5HYK7 790 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 PPP1R18Q6NYC8 613 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 HEATR3Q7Z4Q2 680 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 PROCA1Q8NCQ7 364 aaPredicted RBP14.8□□□□□ -0.04
CLK3-214ENST00000564096 SLF1Q9BQI6 1058 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 UBA5Q9GZZ9 404 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 RPAP3Q9H6T3 665 aaPredicted RBP14.8□□□□□ -0.04
CLK3-214ENST00000564096 PNMA2Q9UL42 364 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 KCNH4Q9UQ05 1017 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 ATP6V1DQ9Y5K8 247 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 PASKQ96RG2 1323 aa14.8□□□□□ -0.04
CLK3-214ENST00000564096 A0A0G2JLL6 359 aaPredicted RBP14.79□□□□□ -0.04
CLK3-214ENST00000564096 CYTH3O43739 400 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 FLOT1O75955 427 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 SLC16A2P36021 539 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 FOSBP53539 338 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 HUNKP57058 714 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 FSTL1Q12841 308 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 PABPC4Q13310 644 aaKnown RBP eCLIP14.79□□□□□ -0.04
CLK3-214ENST00000564096 GNL2Q13823 731 aaKnown RBP14.79□□□□□ -0.04
CLK3-214ENST00000564096 FASTKD5Q7L8L6 764 aaKnown RBP14.79□□□□□ -0.04
CLK3-214ENST00000564096 PRRT2Q7Z6L0 340 aaPredicted RBP14.79□□□□□ -0.04
CLK3-214ENST00000564096 ADGRF4Q8IZF3 695 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 PIBF1Q8WXW3 757 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 SH3GLB2Q9NR46 395 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 EMILIN3Q9NT22 766 aa14.79□□□□□ -0.04
CLK3-214ENST00000564096 CTDP1Q9Y5B0 961 aaPredicted RBP14.79□□□□□ -0.04
CLK3-214ENST00000564096 PHIPQ8WWQ0 1821 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 MYPNQ86TC9 1320 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 PNMA6FA0A0J9YX94 578 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 IRF6O14896 467 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 BRD1O95696 1058 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 ZSCAN22P10073 491 aaPredicted RBP14.78□□□□□ -0.04
CLK3-214ENST00000564096 ZBTB48P10074 688 aaPredicted RBP14.78□□□□□ -0.04
CLK3-214ENST00000564096 FDX1P10109 184 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 CALML3P27482 149 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 FMR1Q06787 632 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLK3-214ENST00000564096 KIAA1755Q5JYT7 1200 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 TTBK2Q6IQ55 1244 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 FBXO18Q8NFZ0 1043 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 KIFC2Q96AC6 838 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 WNK4Q96J92 1243 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 PIGSQ96S52 555 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 CPVLQ9H3G5 476 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 JMJD4Q9H9V9 463 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 VAT1LQ9HCJ6 419 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 LOC285556D6RIA3 1793 aa14.78□□□□□ -0.04
CLK3-214ENST00000564096 hCG_1642624A0A1W2PR95 340 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L15C9J2P7 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L13C9JLJ4 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L11C9JVI0 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L18D6R9N7 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L22D6RA61 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L17D6RBQ6 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L19D6RCP7 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L20D6RJB6 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 GTF2A2P52657 109 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 NAPAP54920 295 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 USP17L24Q0WX57 530 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 PKN1Q16512 942 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 KRT40Q6A162 431 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 GALNT17Q6IS24 598 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 GADL1Q6ZQY3 521 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 PRPF38AQ8NAV1 312 aaKnown RBP14.77□□□□□ -0.05
CLK3-214ENST00000564096 MTMR8Q96EF0 704 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 AMNQ9BXJ7 453 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 BARHL2Q9NY43 387 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 VPS54Q9P1Q0 977 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 PPP1R9AQ9ULJ8 1098 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 PRR12Q9ULL5 1215 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 MTMR6Q9Y217 621 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 TRPM7Q96QT4 1865 aa14.77□□□□□ -0.05
CLK3-214ENST00000564096 DTNBO60941 627 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 F13A1P00488 732 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 MMP1P03956 469 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 CETPP11597 493 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 IRX3P78415 501 aaPredicted RBP14.76□□□□□ -0.05
CLK3-214ENST00000564096 SLC35G1Q2M3R5 365 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 QRICH1Q2TAL8 776 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 CST9Q5W186 159 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 WWC2Q6AWC2 1192 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 MCTP1Q6DN14 999 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 GPKOWQ92917 476 aaPredicted RBP eCLIP14.76□□□□□ -0.05
CLK3-214ENST00000564096 AIFM3Q96NN9 605 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 GLT8D2Q9H1C3 349 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 RANBP17Q9H2T7 1088 aaKnown RBP14.76□□□□□ -0.05
CLK3-214ENST00000564096 ZSCAN16Q9H4T2 348 aaPredicted RBP14.76□□□□□ -0.05
CLK3-214ENST00000564096 PNMA3Q9UL41 463 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 AGTPBP1Q9UPW5 1226 aa14.76□□□□□ -0.05
CLK3-214ENST00000564096 ESYT2A0FGR8 921 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms