RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MAFGO15525 162 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 HK2P52789 917 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 HDLBPQ00341 1268 aaKnown RBP6.79□□□□□ -1.32
VPS35-205ENST00000563984 PAK2Q13177 524 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 NMIQ13287 307 aaPredicted RBP6.79□□□□□ -1.32
VPS35-205ENST00000563984 TMEM67Q5HYA8 995 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 NT5DC4Q86YG4 428 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 RBBP8NLQ8NC74 664 aaPredicted RBP6.79□□□□□ -1.32
VPS35-205ENST00000563984 ZNF526Q8TF50 670 aaPredicted RBP6.79□□□□□ -1.32
VPS35-205ENST00000563984 SYTL4Q96C24 671 aaPredicted RBP6.79□□□□□ -1.32
VPS35-205ENST00000563984 DHRS1Q96LJ7 313 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 DIRC2Q96SL1 478 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 TM9SF2Q99805 663 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 CD320Q9NPF0 282 aa6.79□□□□□ -1.32
VPS35-205ENST00000563984 SHISA3A0PJX4 238 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 RAC2P15153 192 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 ANAPC15P60006 121 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 KCNA10Q16322 511 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 TMEM192Q8IY95 271 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 DAGLBQ8NCG7 672 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 FBXO15Q8NCQ5 510 aaPredicted RBP6.78□□□□□ -1.32
VPS35-205ENST00000563984 RASGRP4Q8TDF6 673 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 DHX38Q92620 1227 aaKnown RBP6.78□□□□□ -1.32
VPS35-205ENST00000563984 SLC9A7Q96T83 725 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 ADAMTS10Q9H324 1103 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.78□□□□□ -1.32
VPS35-205ENST00000563984 PCDHA11Q9Y5I1 949 aa6.78□□□□□ -1.32
VPS35-205ENST00000563984 E9PSI1 815 aa6.77□□□□□ -1.33
VPS35-205ENST00000563984 KRTAP10-2P60368 255 aa6.77□□□□□ -1.33
VPS35-205ENST00000563984 FTSJ3Q8IY81 847 aaKnown RBP6.77□□□□□ -1.33
VPS35-205ENST00000563984 ZNF655Q8N720 491 aaPredicted RBP6.77□□□□□ -1.33
VPS35-205ENST00000563984 SLC6A18Q96N87 628 aa6.77□□□□□ -1.33
VPS35-205ENST00000563984 DNAJC2Q99543 621 aaKnown RBP6.77□□□□□ -1.33
VPS35-205ENST00000563984 HDAC8Q9BY41 377 aa6.77□□□□□ -1.33
VPS35-205ENST00000563984 HPXP02790 462 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 ACRP10323 421 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 TRHRP34981 398 aaPredicted RBP6.76□□□□□ -1.33
VPS35-205ENST00000563984 SOX9P48436 509 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 C9orf131Q5VYM1 1079 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 FBXW10Q5XX13 1052 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 RNF111Q6ZNA4 994 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 PDZD8Q8NEN9 1154 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 GPRASP2Q96D09 838 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 TGIF2Q9GZN2 237 aa6.76□□□□□ -1.33
VPS35-205ENST00000563984 MKRN2Q9H000 416 aaKnown RBP6.76□□□□□ -1.33
VPS35-205ENST00000563984 NSUN3Q9H649 340 aaKnown RBP6.76□□□□□ -1.33
VPS35-205ENST00000563984 SIGLEC6O43699 453 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 FOXD2O60548 495 aaPredicted RBP6.75□□□□□ -1.33
VPS35-205ENST00000563984 ZGLP1P0C6A0 271 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 GJA8P48165 433 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 TEKQ02763 1124 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 CIAPIN1Q6FI81 312 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 ATG14Q6ZNE5 492 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 TMC3Q7Z5M5 1100 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 OXR1Q8N573 874 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 USHBP1Q8N6Y0 703 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 GPATCH11Q8N954 259 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 ABHD4Q8TB40 342 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 MYLIPQ8WY64 445 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 SMARCC1Q92922 1105 aaPredicted RBP6.75□□□□□ -1.33
VPS35-205ENST00000563984 SECISBP2LQ93073 1101 aaKnown RBP6.75□□□□□ -1.33
VPS35-205ENST00000563984 ZNF428Q96B54 188 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 TCTN2Q96GX1 697 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 ZNF512BQ96KM6 892 aaPredicted RBP6.75□□□□□ -1.33
VPS35-205ENST00000563984 CRBNQ96SW2 442 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 PRDM14Q9GZV8 571 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 GINM1Q9NU53 330 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 PRR13Q9NZ81 148 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 SUCOQ9UBS9 1254 aaKnown RBP6.75□□□□□ -1.33
VPS35-205ENST00000563984 PPT2Q9UMR5 302 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 ZNF281Q9Y2X9 895 aa6.75□□□□□ -1.33
VPS35-205ENST00000563984 TMEM253P0C7T8 217 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 GUCY2CP25092 1073 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 PCBP3P57721 371 aaKnown RBP6.74□□□□□ -1.33
VPS35-205ENST00000563984 DUSP4Q13115 394 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 SNW1Q13573 536 aaKnown RBP6.74□□□□□ -1.33
VPS35-205ENST00000563984 AUHQ13825 339 aaKnown RBP6.74□□□□□ -1.33
VPS35-205ENST00000563984 NR0B2Q15466 257 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 SPPL2CQ8IUH8 684 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 LILRA2Q8N149 483 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 LINC00116Q8NCU8 138 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 EFR3BQ9Y2G0 817 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 PCDHB12Q9Y5F1 795 aa6.74□□□□□ -1.33
VPS35-205ENST00000563984 FITM1A5D6W6 292 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 PRAMEF1O95521 474 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 MED14OSP0DP75 135 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 PMS1P54277 932 aaKnown RBP6.73□□□□□ -1.33
VPS35-205ENST00000563984 CHRNEQ04844 493 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 HSP90AB4PQ58FF6 505 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 GGNQ86UU5 652 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 LSRQ86X29 649 aaPredicted RBP6.73□□□□□ -1.33
VPS35-205ENST00000563984 PARD6AQ9NPB6 346 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 CHST7Q9NS84 486 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 FBXL21Q9UKT6 434 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 TCFL5Q9UL49 500 aa6.73□□□□□ -1.33
VPS35-205ENST00000563984 A0A0G2JLL6 359 aaPredicted RBP6.72□□□□□ -1.33
VPS35-205ENST00000563984 SSU72P8A0A1W2PR75 194 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 EIF6P56537 245 aaKnown RBP6.72□□□□□ -1.33
VPS35-205ENST00000563984 BBS9Q3SYG4 887 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 ANKRD39Q53RE8 183 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms