RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 FOXD4L3Q6VB84 417 aaPredicted RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 HOMER1Q86YM7 354 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 ANKRD13AQ8IZ07 590 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 CLMNQ96JQ2 1002 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 PHF20Q9BVI0 1012 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 ZSCAN16Q9H4T2 348 aaPredicted RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 EMILIN3Q9NT22 766 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.74□□□□□ -0.53
SMG1-208ENST00000563448 AFG3L2Q9Y4W6 797 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 CSADQ9Y600 493 aa11.74□□□□□ -0.53
SMG1-208ENST00000563448 KIF23Q02241 960 aaPredicted RBP11.73□□□□□ -0.53
SMG1-208ENST00000563448 TYW1BQ6NUM6 668 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 FAM173BQ6P4H8 233 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 ARMC9Q7Z3E5 817 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 CNKSR2Q8WXI2 1034 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 ZNF408Q9H9D4 720 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 ELP3Q9H9T3 547 aa11.73□□□□□ -0.53
SMG1-208ENST00000563448 TRIM75PA6NK02 468 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 STXBP3O00186 592 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 WDR46O15213 610 aaKnown RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 XBP1P17861 261 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 STAT2P52630 851 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 USP14P54578 494 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 NFKBIBQ15653 356 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 NPY5RQ15761 445 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 LPAR1Q92633 364 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 SH3GLB2Q9NR46 395 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 SEC63Q9UGP8 760 aaKnown RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 PRR12Q9ULL5 1215 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 RBBP6Q7Z6E9 1792 aaKnown RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 MYH7BA7E2Y1 1941 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 PNMA6FA0A0J9YX94 578 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 C19orf81C9J6K1 198 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 ZBTB5O15062 677 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 PLA2G6O60733 806 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 PPP1R11O60927 126 aaPredicted RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 ITGBL1O95965 494 aaPredicted RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 DNM1Q05193 864 aaKnown RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 IKQ13123 557 aaPredicted RBP11.72□□□□□ -0.53
SMG1-208ENST00000563448 LDLRAD1Q5T700 205 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 CHADLQ6NUI6 762 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 HEATR3Q7Z4Q2 680 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 C12orf42Q96LP6 360 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 GBP4Q96PP9 640 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 BARHL2Q9NY43 387 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 ATP6V1DQ9Y5K8 247 aa11.72□□□□□ -0.53
SMG1-208ENST00000563448 BTBD18B2RXH4 712 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 ADAMTS3O15072 1205 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 VCAM1P19320 739 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 U2AF2P26368 475 aaKnown RBP eCLIP11.71□□□□□ -0.533e-25■□□□□ 9.5
SMG1-208ENST00000563448 HMGCS2P54868 508 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 SNAP25P60880 206 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 PPATQ06203 517 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 CDC37Q16543 378 aaPredicted RBP11.71□□□□□ -0.53
SMG1-208ENST00000563448 QRICH1Q2TAL8 776 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 SH3D19Q5HYK7 790 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 DIS3L2Q8IYB7 885 aaKnown RBP11.71□□□□□ -0.53
SMG1-208ENST00000563448 OXER1Q8TDS5 423 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 COA7Q96BR5 231 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 FBXO28Q9NVF7 368 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 FEM1BQ9UK73 627 aa11.71□□□□□ -0.53
SMG1-208ENST00000563448 SPDYE5A6NIY4 337 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 hCG_1984214I3L0E3 225 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 MCM4P33991 863 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 NLRP5P59047 1200 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 FAM160B2Q86V87 743 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 ERO1BQ86YB8 467 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 ZNF713Q8N859 430 aaPredicted RBP11.7□□□□□ -0.54
SMG1-208ENST00000563448 CHURC1Q8WUH1 139 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 RPAP3Q9H6T3 665 aaPredicted RBP11.7□□□□□ -0.54
SMG1-208ENST00000563448 GBA2Q9HCG7 927 aaPredicted RBP11.7□□□□□ -0.54
SMG1-208ENST00000563448 CNPY2Q9Y2B0 182 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 A0A0G2JMZ2 1700 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 CELF2O95319 508 aaKnown RBP11.7□□□□□ -0.54
SMG1-208ENST00000563448 KRT2P35908 639 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 NAPAP54920 295 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 NR5A1Q13285 461 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 SAFBQ15424 915 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMG1-208ENST00000563448 BRAPQ7Z569 592 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 CCDC148Q8NFR7 591 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 KIFC2Q96AC6 838 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 OTUD5Q96G74 571 aa11.7□□□□□ -0.54
SMG1-208ENST00000563448 FOXP1Q9H334 677 aaPredicted RBP11.7□□□□□ -0.54
SMG1-208ENST00000563448 IRF6O14896 467 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 FKBP1BP68106 108 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 GNL2Q13823 731 aaKnown RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 FAM177A1Q8N128 213 aaPredicted RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 RBM46Q8TBY0 533 aaKnown RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 TNFRSF25Q93038 417 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 ZMYND12Q9H0C1 365 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 RANBP17Q9H2T7 1088 aaKnown RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 PCDHA4Q9UN74 947 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 SMCO2A6NFE2 343 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 UNCXA6NJT0 531 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 PPIL2Q13356 520 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 MYSM1Q5VVJ2 828 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 CST9Q5W186 159 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 NOSTRINQ8IVI9 506 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms