RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 KIAA1217Q5T5P2 1943 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 LIFRP42702 1097 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 RBM25P49756 843 aaKnown RBP11.46□□□□□ -0.57
CLK3-208ENST00000562626 ANAPC15P60006 121 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 PABPC4Q13310 644 aaKnown RBP eCLIP11.46□□□□□ -0.57
CLK3-208ENST00000562626 COG2Q14746 738 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 TMEM132BQ14DG7 1078 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 CCDC178Q5BJE1 867 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 PPP4R3BQ5MIZ7 849 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 LBX2Q6XYB7 198 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 SGMS1Q86VZ5 419 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 CCDC144CPQ8IYA2 1237 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 CD99L2Q8TCZ2 262 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 SMCR8Q8TEV9 937 aaPredicted RBP11.46□□□□□ -0.57
CLK3-208ENST00000562626 BRF1Q92994 677 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 KIFC2Q96AC6 838 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 SLF1Q9BQI6 1058 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 MTA3Q9BTC8 594 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 BEGAINQ9BUH8 593 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 UBA5Q9GZZ9 404 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 PORCNQ9H237 461 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 PNMA3Q9UL41 463 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 PRR12Q9ULL5 1215 aa11.46□□□□□ -0.57
CLK3-208ENST00000562626 ISY1Q9ULR0 285 aaKnown RBP11.46□□□□□ -0.57
CLK3-208ENST00000562626 DOCK5Q9H7D0 1870 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 ZNF536O15090 1300 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 PALM3A6NDB9 673 aaPredicted RBP11.45□□□□□ -0.58
CLK3-208ENST00000562626 VWA5AO00534 786 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 CYTH3O43739 400 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 DTNBO60941 627 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 PLEKHA8P1O95397 391 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 APOA5Q6Q788 366 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 BTNL9Q6UXG8 535 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 CMTR1Q8N1G2 835 aaKnown RBP11.45□□□□□ -0.58
CLK3-208ENST00000562626 NUP133Q8WUM0 1156 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 FAM217BQ9NTX9 383 aaPredicted RBP11.45□□□□□ -0.58
CLK3-208ENST00000562626 MORF4L1Q9UBU8 362 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 ZNF214Q9UL59 606 aaPredicted RBP11.45□□□□□ -0.58
CLK3-208ENST00000562626 HPS5Q9UPZ3 1129 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 RIPK3Q9Y572 518 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 MYH7BA7E2Y1 1941 aa11.45□□□□□ -0.58
CLK3-208ENST00000562626 HTTP42858 3142 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 MYPNQ86TC9 1320 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 KLF18A0A0U1RQI7 1052 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 ERICH2A1L162 156 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 FKTNO75072 461 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 LARGE1O95461 756 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 HMGB1P09429 215 aaKnown RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 PARP1P09874 1014 aaKnown RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 PSMA5P28066 241 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 GCLCP48506 637 aaPredicted RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 STAT2P52630 851 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 ERVK-9P63128 1117 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 ERVK-24P63145 666 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 SP3Q02447 781 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 SART3Q15020 963 aaKnown RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 FAM110CQ1W6H9 321 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 NOM1Q5C9Z4 860 aaKnown RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 PRPF38BQ5VTL8 546 aaKnown RBP11.44□□□□□ -0.58
CLK3-208ENST00000562626 NFXL1Q6ZNB6 911 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 MICU3Q86XE3 530 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 TRIM47Q96LD4 638 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 TBC1D32Q96NH3 1257 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 EFCC1Q9HA90 598 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 SLC38A10Q9HBR0 1119 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 FEM1BQ9UK73 627 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 CYP46A1Q9Y6A2 500 aa11.44□□□□□ -0.58
CLK3-208ENST00000562626 CCDC69A6NI79 296 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 TNRC18O15417 2968 aaPredicted RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 PLA2G6O60733 806 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 DDAH1O94760 285 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 CD2BP2O95400 341 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 CDC27P30260 824 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 AK2P54819 239 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 LACTBP83111 547 aaPredicted RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 ASPRV1Q53RT3 343 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 SYDE2Q5VT97 1194 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 CCDC174Q6PII3 467 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 NOL8Q76FK4 1167 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 CATIPQ7Z7H3 387 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 FBXL16Q8N461 479 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 PRPF38AQ8NAV1 312 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 AGBL1Q96MI9 1066 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 MOV10L1Q9BXT6 1211 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 RANBP17Q9H2T7 1088 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 JMJD4Q9H9V9 463 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 RAVER2Q9HCJ3 691 aaKnown RBP11.43□□□□□ -0.58
CLK3-208ENST00000562626 PDRG1Q9NUG6 133 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 RABGAP1Q9Y3P9 1069 aa11.43□□□□□ -0.58
CLK3-208ENST00000562626 NID2Q14112 1375 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 KLRF2D3W0D1 207 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 PPP1R11O60927 126 aaPredicted RBP11.42□□□□□ -0.58
CLK3-208ENST00000562626 EVCP57679 992 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 FUT2Q10981 343 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 ST3GAL1Q11201 340 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 IKQ13123 557 aaPredicted RBP11.42□□□□□ -0.58
CLK3-208ENST00000562626 PLS1Q14651 629 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 GPATCH4Q5T3I0 446 aaKnown RBP11.42□□□□□ -0.58
CLK3-208ENST00000562626 FAM160B2Q86V87 743 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 ADGRF4Q8IZF3 695 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms