RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 LGALS16A8MUM7 142 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 KRT86O43790 486 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 IPO7O95373 1038 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 EIF5P55010 431 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 HERVK_113P62684 666 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 DYNLL1P63167 89 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 SUSD4Q5VX71 490 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 JAKMIP2Q96AA8 810 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 TRIM47Q96LD4 638 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 SLC4A9Q96Q91 983 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 PLEKHA4Q9H4M7 779 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 VIPAS39Q9H9C1 493 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 GNL3LQ9NVN8 582 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 DOCK2Q92608 1830 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 CNTNAP5Q8WYK1 1306 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 KAT6BQ8WYB5 2073 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 ERVV-1B6SEH8 477 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 TRAPPC10P48553 1259 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 CKAP4Q07065 602 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 IRF2BP1Q8IU81 584 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 ZNF34Q8IZ26 560 aa15.68■□□□□ 0.1
VPS9D1-202ENST00000561976 DDAH1O94760 285 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 SCG2P13521 617 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 STIM1Q13586 685 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 SKIDA1Q1XH10 827 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 EHBP1Q8NDI1 1231 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 DNAJC7Q99615 494 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 CRACR2AQ9BSW2 395 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 ZNHIT6Q9NWK9 470 aaKnown RBP15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 HPCAL4Q9UM19 191 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 CAPN11Q9UMQ6 739 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 DCCP43146 1447 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 SYF2O95926 243 aaKnown RBP15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 CTR9Q6PD62 1173 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 ADSSL1Q8N142 457 aa15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 PCMTD1Q96MG8 357 aaPredicted RBP15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 BAZ2BQ9UIF8 2168 aaKnown RBP15.67■□□□□ 0.1
VPS9D1-202ENST00000561976 TRIM21P19474 475 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 CYLC1P35663 651 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 LONP1P36776 959 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 PMS1P54277 932 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 CHRNDQ07001 517 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 CCDC152Q4G0S7 254 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 WDR59Q6PJI9 974 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 RIN2Q8WYP3 895 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 SMARCC1Q92922 1105 aaPredicted RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 PLIN2Q99541 437 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 MYH2Q9UKX2 1941 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 TOGARAM1Q9Y4F4 1720 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 A0A1W2PQC6 194 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 B4DLN1 442 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 NMT2O60551 498 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 EEF1GP26641 437 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 AARSP49588 968 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 PAPD7Q5XG87 772 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 GSPT2Q8IYD1 628 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 RPGRIP1Q96KN7 1286 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 JADE2Q9NQC1 790 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 BCORQ6W2J9 1755 aa15.66■□□□□ 0.1
VPS9D1-202ENST00000561976 EIF3CLB5ME19 914 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 ANKRD65E5RJM6 399 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 PSMA7O14818 248 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 ADAMTS3O15072 1205 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 VEGFAP15692 232 aaPredicted RBP15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 GYG1P46976 350 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 COG1Q8WTW3 980 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 EEF2KMTQ96G04 330 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 EIF3CQ99613 913 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 ARAP2Q8WZ64 1704 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 USP17L12C9JPN9 530 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 USP17L21D6R901 530 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 DNM2P50570 870 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 FAM47AQ5JRC9 791 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 ARL6IP4Q66PJ3 421 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 RIOK1Q9BRS2 568 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 DISC1Q9NRI5 854 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 AGPAT5Q9NUQ2 364 aa15.65■□□□□ 0.1
VPS9D1-202ENST00000561976 MACROD2A1Z1Q3 448 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 TARSL2A2RTX5 802 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 ZNF185O15231 689 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 IDEP14735 1019 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 IL6STP40189 918 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 BRINP3Q76B58 766 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 ZNF507Q8TCN5 953 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 THAP9Q9H5L6 903 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 PDS5AQ29RF7 1337 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 SHANK3Q9BYB0 1731 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 GGCXP38435 758 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 PFKFB3Q16875 520 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 DTHD1Q6ZMT9 781 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 HINFPQ9BQA5 517 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 LACRTQ9GZZ8 138 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 NHEJ1Q9H9Q4 299 aaPredicted RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 EXOC1Q9NV70 894 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 DISP2A7MBM2 1401 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 PP2D1A8MPX8 630 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 PPFIA4O75335 1185 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 PRPF6O94906 941 aaKnown RBP15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 UBA7P41226 1012 aa15.64■□□□□ 0.09
VPS9D1-202ENST00000561976 MAGEA9P43362 315 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms