RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 STX8Q9UNK0 236 aa14.91□□□□□ -0.02
SNX1-209ENST00000559961 ATP11BQ9Y2G3 1177 aa14.91□□□□□ -0.02
SNX1-209ENST00000559961 DDX60LQ5H9U9 1706 aaKnown RBP14.91□□□□□ -0.02
SNX1-209ENST00000559961 RANBP6O60518 1105 aaKnown RBP14.9□□□□□ -0.02
SNX1-209ENST00000559961 SLC1A4P43007 532 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 OAZ1P54368 228 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 FAM160B2Q86V87 743 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 TRPV1Q8NER1 839 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 CHST13Q8NET6 341 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 OTUD7AQ8TE49 926 aaPredicted RBP14.9□□□□□ -0.02
SNX1-209ENST00000559961 SPC25Q9HBM1 224 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 XPNPEP3Q9NQH7 507 aa14.9□□□□□ -0.02
SNX1-209ENST00000559961 ZNF214Q9UL59 606 aaPredicted RBP14.9□□□□□ -0.02
SNX1-209ENST00000559961 TMEM232C9JQI7 657 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 ATP2A1O14983 1001 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 AKR1A1P14550 325 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 STAT2P52630 851 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 RTP1P59025 263 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 MDM2Q00987 491 aaPredicted RBP14.89□□□□□ -0.03
SNX1-209ENST00000559961 ZNF792Q3KQV3 632 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 LRRC47Q8N1G4 583 aaKnown RBP14.89□□□□□ -0.03
SNX1-209ENST00000559961 RAVER2Q9HCJ3 691 aaKnown RBP14.89□□□□□ -0.03
SNX1-209ENST00000559961 FAM184BQ9ULE4 1060 aa14.89□□□□□ -0.03
SNX1-209ENST00000559961 IGKV6D-41A0A0C4DH26 115 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 ADCYAP1R1P41586 468 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 PDE1AP54750 535 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 LRRC41Q15345 812 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 MCMDC2Q4G0Z9 681 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 SLC39A5Q6ZMH5 540 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 STAG1Q8WVM7 1258 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 RILPL2Q969X0 211 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 SLC38A10Q9HBR0 1119 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 PRDM5Q9NQX1 630 aaPredicted RBP14.88□□□□□ -0.03
SNX1-209ENST00000559961 SYNGAP1Q96PV0 1343 aa14.88□□□□□ -0.03
SNX1-209ENST00000559961 PLXNB2O15031 1838 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 MCCP23508 829 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 CTDSPL2Q05D32 466 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 TKFCQ3LXA3 575 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 GPR153Q6NV75 609 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 REPS2Q8NFH8 660 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 NUP133Q8WUM0 1156 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 FERMT2Q96AC1 680 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 GMCL1Q96IK5 515 aa14.87□□□□□ -0.03
SNX1-209ENST00000559961 ZHX1Q9UKY1 873 aaPredicted RBP14.87□□□□□ -0.03
SNX1-209ENST00000559961 IGHA2P01877 340 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 ALX1Q15699 326 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 CCDC96Q2M329 555 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 LRIT3Q3SXY7 679 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 RRP12Q5JTH9 1297 aaKnown RBP14.86□□□□□ -0.03
SNX1-209ENST00000559961 RCSD1Q6JBY9 416 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 B4GALNT3Q6L9W6 998 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 CCDC129Q6ZRS4 1044 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 ZNF467Q7Z7K2 595 aaPredicted RBP14.86□□□□□ -0.03
SNX1-209ENST00000559961 VTI1AQ96AJ9 217 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 LNPKQ9C0E8 428 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 ACAD9Q9H845 621 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 HOMER2Q9NSB8 354 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 MTMR7Q9Y216 660 aa14.86□□□□□ -0.03
SNX1-209ENST00000559961 BAZ2AQ9UIF9 1905 aaKnown RBP14.86□□□□□ -0.03
SNX1-209ENST00000559961 PLIN4Q96Q06 1357 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 POTEB2H3BUK9 544 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 NOL8Q76FK4 1167 aaKnown RBP14.85□□□□□ -0.03
SNX1-209ENST00000559961 PCSK9Q8NBP7 692 aaKnown RBP14.85□□□□□ -0.03
SNX1-209ENST00000559961 CHMP4CQ96CF2 233 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 TSEN34Q9BSV6 310 aaKnown RBP14.85□□□□□ -0.03
SNX1-209ENST00000559961 ABHD16BQ9H3Z7 469 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 RNF41Q9H4P4 317 aaPredicted RBP14.85□□□□□ -0.03
SNX1-209ENST00000559961 ANAPC4Q9UJX5 808 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 PNMA2Q9UL42 364 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 RIPK3Q9Y572 518 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 TACC3Q9Y6A5 838 aa14.85□□□□□ -0.03
SNX1-209ENST00000559961 MYH8P13535 1937 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 CEP290O15078 2479 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 ASB14A6NK59 587 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 DCDC2CA8MYV0 355 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 HIP1O00291 1037 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 PLA2G6O60733 806 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 PGK1P00558 417 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 PCP11498 1178 aaKnown RBP14.84□□□□□ -0.03
SNX1-209ENST00000559961 ALAS1P13196 640 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 ACVR2BQ13705 512 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 MAMDC4Q6UXC1 1216 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 MFSD6Q6ZSS7 791 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 DCAF4Q8WV16 495 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 LRCH3Q96II8 777 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 TRERF1Q96PN7 1200 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 PHF24Q9UPV7 400 aa14.84□□□□□ -0.03
SNX1-209ENST00000559961 MOXD2PA6NHM9 499 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 ORC4O43929 436 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 DUSP11O75319 330 aaKnown RBP14.83□□□□□ -0.04
SNX1-209ENST00000559961 FGAP02671 866 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 ZNF865P0CJ78 1059 aaPredicted RBP14.83□□□□□ -0.04
SNX1-209ENST00000559961 TAL1P17542 331 aaPredicted RBP14.83□□□□□ -0.04
SNX1-209ENST00000559961 TRIM60Q495X7 471 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 C1orf53Q5VUE5 145 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 CCDC174Q6PII3 467 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 KCTD1Q719H9 257 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 DEFB123Q8N688 67 aa14.83□□□□□ -0.04
SNX1-209ENST00000559961 MPHOSPH6Q99547 160 aaKnown RBP14.83□□□□□ -0.04
SNX1-209ENST00000559961 STARD7Q9NQZ5 370 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms