RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CWC22Q9HCG8 908 aaKnown RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 RBM28Q9NW13 759 aaKnown RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 FRMPD2Q68DX3 1309 aaPredicted RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 ADGRA2Q96PE1 1338 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 A0A0G2JMZ2 1700 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 GOLGA8AA7E2F4 631 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 ST18O60284 1047 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 METAP2P50579 478 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP3-216ENST00000559873 NEK4P51957 841 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 OAZ1P54368 228 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 SYDE2Q5VT97 1194 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 BTNL9Q6UXG8 535 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 GPRC5AQ8NFJ5 357 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 ATG4CQ96DT6 458 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 ERO1AQ96HE7 468 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 ALDH8A1Q9H2A2 487 aaPredicted RBP11.73□□□□□ -0.53
USP3-216ENST00000559873 SENP2Q9HC62 589 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 GPCPD1Q9NPB8 672 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 GPHNQ9NQX3 736 aaPredicted RBP11.73□□□□□ -0.53
USP3-216ENST00000559873 FBXO28Q9NVF7 368 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 MORF4L1Q9UBU8 362 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 CPA4Q9UI42 421 aa11.73□□□□□ -0.53
USP3-216ENST00000559873 NID2Q14112 1375 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 KLRF2D3W0D1 207 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 GPR25O00155 361 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 VWA5AO00534 786 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 FKTNO75072 461 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 GOLGA8HP0CJ92 632 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 BCRP11274 1271 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 ERVK-9P63128 1117 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 ERVK-24P63145 666 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 SP3Q02447 781 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 APOBRQ0VD83 1088 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 TRAF1Q13077 416 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 RTN1Q16799 776 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 CPLX2Q6PUV4 134 aaKnown RBP11.72□□□□□ -0.53
USP3-216ENST00000559873 C17orf99Q6UX52 265 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 RASGRP2Q7LDG7 609 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 ANKRD13CQ8N6S4 541 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 CHMP4CQ96CF2 233 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 MYL10Q9BUA6 226 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 TEX13BQ9BXU2 312 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 MAD2L2Q9UI95 211 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 PRR12Q9ULL5 1215 aa11.72□□□□□ -0.53
USP3-216ENST00000559873 PALM3A6NDB9 673 aaPredicted RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 SMARCA1P28370 1054 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 AK2P54819 239 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 EVCP57679 992 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 COL9A3Q14050 684 aaPredicted RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 TOB2Q14106 344 aaPredicted RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 PLS1Q14651 629 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 FANCBQ8NB91 859 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 SHCBP1Q8NEM2 672 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 ZNF274Q96GC6 653 aaPredicted RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 SLC38A10Q9HBR0 1119 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 RBM27Q9P2N5 1060 aaKnown RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 SEC63Q9UGP8 760 aaKnown RBP11.71□□□□□ -0.53
USP3-216ENST00000559873 ADAMTS5Q9UNA0 930 aa11.71□□□□□ -0.53
USP3-216ENST00000559873 PARP14Q460N5 1801 aa11.71□□□□□ -0.54
USP3-216ENST00000559873 CPLX1O14810 134 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 ATP2A1O14983 1001 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 FOXN1O15353 648 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 SLC25A27O95847 323 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 GNRH1P01148 92 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 HSPA8P11142 646 aaKnown RBP11.7□□□□□ -0.54
USP3-216ENST00000559873 RXRAP19793 462 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 MAPK4P31152 587 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 SLC16A2P36021 539 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 FCGRTP55899 365 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 LACTBP83111 547 aaPredicted RBP11.7□□□□□ -0.54
USP3-216ENST00000559873 SNRNP48Q6IEG0 339 aaKnown RBP11.7□□□□□ -0.54
USP3-216ENST00000559873 TTBK2Q6IQ55 1244 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 TMTC3Q6ZXV5 915 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 ZNF296Q8WUU4 475 aaPredicted RBP11.7□□□□□ -0.54
USP3-216ENST00000559873 SPZ1Q9BXG8 430 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 SPATC1LQ9H0A9 340 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 RANBP17Q9H2T7 1088 aaKnown RBP11.7□□□□□ -0.54
USP3-216ENST00000559873 MROH8Q9H579 483 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 RBPJLQ9UBG7 517 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 FBXO40Q9UH90 709 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 TSKSQ9UJT2 592 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 BRPF3Q9ULD4 1205 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 IVNS1ABPQ9Y6Y0 642 aa11.7□□□□□ -0.54
USP3-216ENST00000559873 PCNTO95613 3336 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 RLFQ13129 1914 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 TNPO2O14787 897 aaKnown RBP11.69□□□□□ -0.54
USP3-216ENST00000559873 CDKL5O76039 1030 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 ICAM1P05362 532 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 HOXD10P28358 340 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 STAT3P40763 770 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 MCM2P49736 904 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 TMEM132BQ14DG7 1078 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 CDC37Q16543 378 aaPredicted RBP11.69□□□□□ -0.54
USP3-216ENST00000559873 TKFCQ3LXA3 575 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 WDR78Q5VTH9 848 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 CCDC174Q6PII3 467 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 RAB11FIP4Q86YS3 637 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 RIOX2Q8IUF8 465 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 ADGRF4Q8IZF3 695 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms