RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GSG1L2A8MUP6 293 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 HSF2BPO75031 334 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 ZCRB1Q8TBF4 217 aaKnown RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 SECISBP2LQ93073 1101 aaKnown RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 GSDMAQ96QA5 445 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 CNNM2Q9H8M5 875 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 NHEJ1Q9H9Q4 299 aaPredicted RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 NLRC4Q9NPP4 1024 aa12.68□□□□□ -0.38
LDLR-208ENST00000558518 PACSIN2Q9UNF0 486 aaPredicted RBP12.68□□□□□ -0.38
LDLR-208ENST00000558518 WTIPA6NIX2 430 aaPredicted RBP12.67□□□□□ -0.38
LDLR-208ENST00000558518 PDE6BP35913 854 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 USP5P45974 858 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 HERVK_113P62684 666 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 ASIC1P78348 528 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 GUCY1A3Q02108 690 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.67□□□□□ -0.38
LDLR-208ENST00000558518 NOC4LQ9BVI4 516 aaKnown RBP12.67□□□□□ -0.38
LDLR-208ENST00000558518 CPVLQ9H3G5 476 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 KANSL2Q9H9L4 492 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 ADAMTS3O15072 1205 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 CIAO1O76071 339 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 CKAP4Q07065 602 aaKnown RBP12.67□□□□□ -0.38
LDLR-208ENST00000558518 KLHL7Q8IXQ5 586 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 EFCAB13Q8IY85 973 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 ESR2Q92731 530 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 FAM212AQ96EL1 285 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 HAUS4Q9H6D7 363 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 PDE8BO95263 885 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 SEC24CP53992 1094 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 KRT83P78385 493 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 EP400NLQ6ZTU2 488 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 TMOD3Q9NYL9 352 aa12.67□□□□□ -0.38
LDLR-208ENST00000558518 CDHR2Q9BYE9 1310 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 ABCC6O95255 1503 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 RDXP35241 583 aaKnown RBP12.66□□□□□ -0.38
LDLR-208ENST00000558518 SPAG1Q07617 926 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 IQCA1Q86XH1 822 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 KAT2BQ92831 832 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 IFIH1Q9BYX4 1025 aaKnown RBP12.66□□□□□ -0.38
LDLR-208ENST00000558518 ZHX3Q9H4I2 956 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 CRYBG1Q9Y4K1 1723 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 LRRC37A3O60309 1634 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 A0A087WUV0 522 aaPredicted RBP12.66□□□□□ -0.38
LDLR-208ENST00000558518 PSMA7O14818 248 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 SLC5A1P13866 664 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 PAFAH1B1P43034 410 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 ACTN3Q08043 901 aaPredicted RBP12.66□□□□□ -0.38
LDLR-208ENST00000558518 CDKAL1Q5VV42 579 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 DYMQ7RTS9 669 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 CACNA2D4Q7Z3S7 1137 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 MB21D1Q8N884 522 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 CCDC43Q96MW1 224 aaKnown RBP12.66□□□□□ -0.38
LDLR-208ENST00000558518 TUBGCP2Q9BSJ2 902 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 LIFRP42702 1097 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 PDE4DQ08499 809 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 C8orf74Q6P047 294 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 AATFQ9NY61 560 aaKnown RBP eCLIP12.66□□□□□ -0.38
LDLR-208ENST00000558518 NFU1Q9UMS0 254 aa12.66□□□□□ -0.38
LDLR-208ENST00000558518 CCDC194A0A1B0GVG4 234 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 ATF3P18847 181 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 TRHP20396 242 aaPredicted RBP12.65□□□□□ -0.38
LDLR-208ENST00000558518 GYG1P46976 350 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 GUCY2DQ02846 1103 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 UBE3CQ15386 1083 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 BICDL1Q6ZP65 573 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 RRAGAQ7L523 313 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 HEATR3Q7Z4Q2 680 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 SGMS1Q86VZ5 419 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 DNAAF5Q86Y56 855 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 SCLT1Q96NL6 688 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 SLC39A2Q9NP94 309 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 CAPN6Q9Y6Q1 641 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 USO1O60763 962 aaKnown RBP12.65□□□□□ -0.38
LDLR-208ENST00000558518 RASSF7Q02833 373 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 IFT88Q13099 833 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 CCNI2Q6ZMN8 369 aaPredicted RBP12.65□□□□□ -0.38
LDLR-208ENST00000558518 MMS22LQ6ZRQ5 1243 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 TRAPPC11Q7Z392 1133 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 CCDC51Q96ER9 411 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 SLIT1O75093 1534 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 NALCNQ8IZF0 1738 aa12.65□□□□□ -0.38
LDLR-208ENST00000558518 NKRFO15226 690 aaKnown RBP eCLIP12.64□□□□□ -0.39
LDLR-208ENST00000558518 RAD21O60216 631 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 TACC1O75410 805 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 FTCDO95954 541 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 GUCY2CP25092 1073 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 MCM3P25205 808 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 INF2Q27J81 1249 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 CFAP58Q5T655 872 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 SHISA4Q96DD7 197 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 MYCBPQ99417 103 aaPredicted RBP12.64□□□□□ -0.39
LDLR-208ENST00000558518 RIPOR2Q9Y4F9 1068 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 TSPY2A6NKD2 308 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 SMIM23A6NLE4 172 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 E7EVH7 732 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 MAP2K2P36507 400 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 CTSWP56202 376 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 CCDC24Q8N4L8 307 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 ENAHQ8N8S7 591 aaPredicted RBP12.64□□□□□ -0.39
LDLR-208ENST00000558518 MTRQ99707 1265 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms