RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CCDC50Q8IVM0 306 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 SH3GL2Q99962 352 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 IRX2Q9BZI1 471 aaPredicted RBP12.23□□□□□ -0.45
USP3-206ENST00000558157 PIH1D3Q9NQM4 214 aaKnown RBP12.23□□□□□ -0.45
USP3-206ENST00000558157 MYO6Q9UM54 1294 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 ATP6V0A2Q9Y487 856 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 CAPN7Q9Y6W3 813 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 KIAA1551Q9HCM1 1747 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 NR1I3Q14994 352 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 FBXO33Q7Z6M2 555 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 SP8Q8IXZ3 490 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 OTUD6BQ8N6M0 293 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 MLKLQ8NB16 471 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 MAGEC3Q8TD91 643 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 ZKSCAN4Q969J2 545 aaPredicted RBP12.23□□□□□ -0.45
USP3-206ENST00000558157 MTFR1LQ9H019 292 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 GGA1Q9UJY5 639 aa12.23□□□□□ -0.45
USP3-206ENST00000558157 MEFVO15553 781 aaPredicted RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 ATP2B4P23634 1241 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SMTNP53814 917 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SKOR1P84550 965 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 AMPD2Q01433 879 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 EXOSC10Q01780 885 aaKnown RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 MAP2K1Q02750 393 aaPredicted RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 DRP2Q13474 957 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SLC39A14Q15043 492 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SLC35F6Q8N357 371 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 A0A1B0GTH6 734 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 CYP21A2P08686 494 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 GGCXP38435 758 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 TTF1Q15361 905 aaPredicted RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 ISM2Q6H9L7 571 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 PPFIBP1Q86W92 1011 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 CNGA4Q8IV77 575 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 DHX37Q8IY37 1157 aaKnown RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 FAXDC2Q96IV6 333 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SEC62Q99442 399 aaKnown RBP12.22□□□□□ -0.45
USP3-206ENST00000558157 GRIN2DO15399 1336 aa12.22□□□□□ -0.45
USP3-206ENST00000558157 SOWAHDA6NJG2 315 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 RNF113AO15541 343 aaKnown RBP12.21□□□□□ -0.45
USP3-206ENST00000558157 EPB41P11171 864 aaKnown RBP12.21□□□□□ -0.45
USP3-206ENST00000558157 HIBADHP31937 336 aaKnown RBP12.21□□□□□ -0.45
USP3-206ENST00000558157 CPLX2Q6PUV4 134 aaKnown RBP12.21□□□□□ -0.45
USP3-206ENST00000558157 RAD9BQ6WBX8 426 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 TRIML1Q8N9V2 468 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 NOA1Q8NC60 698 aaKnown RBP12.21□□□□□ -0.45
USP3-206ENST00000558157 TBC1D16Q8TBP0 767 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 C8orf76Q96K31 380 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 POLLQ9UGP5 575 aa12.21□□□□□ -0.45
USP3-206ENST00000558157 A0A1B0GUA9 196 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 GOLGA6BA6NDN3 693 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 PATL2C9JE40 543 aaKnown RBP12.21□□□□□ -0.46
USP3-206ENST00000558157 OPA1O60313 960 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 POLD1P28340 1107 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 PDIA3P30101 505 aaKnown RBP12.21□□□□□ -0.46
USP3-206ENST00000558157 CKAP4Q07065 602 aaKnown RBP12.21□□□□□ -0.46
USP3-206ENST00000558157 PPP2R5AQ15172 486 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 ZMYM1Q5SVZ6 1142 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 CCDC129Q6ZRS4 1044 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 TMTC1Q8IUR5 882 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 N4BP2L2Q92802 583 aaPredicted RBP12.21□□□□□ -0.46
USP3-206ENST00000558157 ODF2LQ9ULJ1 636 aa12.21□□□□□ -0.46
USP3-206ENST00000558157 IDH1O75874 414 aaKnown RBP12.2□□□□□ -0.46
USP3-206ENST00000558157 SCP2P22307 547 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 MTF1Q14872 753 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 C15orf52Q6ZUT6 534 aaKnown RBP12.2□□□□□ -0.46
USP3-206ENST00000558157 WWC3Q9ULE0 1092 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 NFE2L3Q9Y4A8 694 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 MROH7-TTC4A0A0A0MT08 1334 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 MAST3O60307 1309 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 SRRM3A6NNA2 597 aaPredicted RBP12.2□□□□□ -0.46
USP3-206ENST00000558157 C6orf229H3BNL8 230 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 AGPSO00116 658 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 FOSBP53539 338 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 ZKSCAN8Q15776 578 aaPredicted RBP12.2□□□□□ -0.46
USP3-206ENST00000558157 MCMDC2Q4G0Z9 681 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 NT5DC1Q5TFE4 455 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 RESP18Q5W5W9 173 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 TRAPPC11Q7Z392 1133 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 CNKSR1Q969H4 720 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 FAM212AQ96EL1 285 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 CTAGE1Q96RT6 745 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.2□□□□□ -0.461e-6■■■□□ 15.4
USP3-206ENST00000558157 KLC4Q9NSK0 619 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 ZNF219Q9P2Y4 722 aaPredicted RBP12.2□□□□□ -0.46
USP3-206ENST00000558157 DENND2AQ9ULE3 1009 aa12.2□□□□□ -0.46
USP3-206ENST00000558157 MAST2Q6P0Q8 1798 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 ITIH6Q6UXX5 1313 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 M0R2C6 588 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 SEMA3EO15041 775 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 FDPSP14324 419 aaKnown RBP12.19□□□□□ -0.46
USP3-206ENST00000558157 ERCC5P28715 1186 aaPredicted RBP12.19□□□□□ -0.46
USP3-206ENST00000558157 GNGT1P63211 74 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 AKAP17AQ02040 695 aaKnown RBP12.19□□□□□ -0.46
USP3-206ENST00000558157 GUCY1B3Q02153 619 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 IQCEQ6IPM2 695 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 ILDR2Q71H61 639 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 ZNF804AQ7Z570 1209 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 IQCA1Q86XH1 822 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 TRIM6Q9C030 488 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms