RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 GBP3Q9H0R5 595 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 APEX2Q9UBZ4 518 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 TCFL5Q9UL49 500 aa7.25□□□□□ -1.25
SCFD1-221ENST00000556534 TMEM82A0PJX8 343 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 ANKRD34BA5PLL1 514 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 ZNF205O95201 554 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 GJB6O95452 261 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 GSNP06396 782 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 SYPP08247 313 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 GTF2F1P35269 517 aaKnown RBP eCLIP7.24□□□□□ -1.25
SCFD1-221ENST00000556534 PCBP3P57721 371 aaKnown RBP7.24□□□□□ -1.25
SCFD1-221ENST00000556534 RAB33AQ14088 237 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 TCEAL1Q15170 157 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 ADCY4Q8NFM4 1077 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 KRTAP4-8Q9BYQ9 185 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 NOL6Q9H6R4 1146 aaKnown RBP7.24□□□□□ -1.25
SCFD1-221ENST00000556534 TMEM59LQ9UK28 342 aa7.24□□□□□ -1.25
SCFD1-221ENST00000556534 A0A087WZG4 1122 aa7.23□□□□□ -1.25
SCFD1-221ENST00000556534 ZNF143P52747 638 aaPredicted RBP7.23□□□□□ -1.25
SCFD1-221ENST00000556534 NOL9Q5SY16 702 aaKnown RBP7.23□□□□□ -1.25
SCFD1-221ENST00000556534 CKAP2LQ8IYA6 745 aa7.23□□□□□ -1.25
SCFD1-221ENST00000556534 FLAD1Q8NFF5 587 aa7.23□□□□□ -1.25
SCFD1-221ENST00000556534 G6PC3Q9BUM1 346 aa7.23□□□□□ -1.25
SCFD1-221ENST00000556534 CGGBP1Q9UFW8 167 aaPredicted RBP7.23□□□□□ -1.25
SCFD1-221ENST00000556534 CTNND2Q9UQB3 1225 aa7.23□□□□□ -1.25
SCFD1-221ENST00000556534 R3HCC1Q9Y3T6 440 aaKnown RBP7.23□□□□□ -1.25
SCFD1-221ENST00000556534 SUSD5O60279 629 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 FKTNO75072 461 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 DDAH1O94760 285 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 ZGLP1P0C6A0 271 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 NAT2P11245 290 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 ITGB5P18084 799 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 ZDHHC15Q96MV8 337 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 ADAMTS10Q9H324 1103 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 ST7Q9NRC1 585 aa7.22□□□□□ -1.25
SCFD1-221ENST00000556534 PPM1BO75688 479 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 VAV1P15498 845 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 IRAK1P51617 712 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 SERINC3Q13530 473 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 RTP2Q5QGT7 225 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 NBPF6Q5VWK0 638 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 ZPBP2Q6X784 338 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 ARHGEF39Q8N4T4 335 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 RCC1LQ96I51 464 aaKnown RBP7.21□□□□□ -1.26
SCFD1-221ENST00000556534 NBPF4Q96M43 638 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 HIRIP3Q9BW71 556 aaPredicted RBP7.21□□□□□ -1.26
SCFD1-221ENST00000556534 SLC12A9Q9BXP2 914 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 EBF1Q9UH73 591 aa7.21□□□□□ -1.26
SCFD1-221ENST00000556534 SF3B6Q9Y3B4 125 aaKnown RBP7.21□□□□□ -1.26
SCFD1-221ENST00000556534 PAPLNO95428 1278 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 GDNFP39905 211 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 RBL2Q08999 1139 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 PPP2R5DQ14738 602 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 WAPLQ7Z5K2 1190 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 CCDC120Q96HB5 630 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 TRIM55Q9BYV6 548 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 DIS3Q9Y2L1 958 aaKnown RBP7.2□□□□□ -1.26
SCFD1-221ENST00000556534 MSRB2Q9Y3D2 182 aa7.2□□□□□ -1.26
SCFD1-221ENST00000556534 RPL10P27635 214 aaKnown RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 CEBPAP49715 358 aaPredicted RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 HK2P52789 917 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 GRB10Q13322 594 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 SLC10A6Q3KNW5 377 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 CWF19L1Q69YN2 538 aaKnown RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 ADAT2Q7Z6V5 191 aaKnown RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 ATG4DQ86TL0 474 aaPredicted RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 LINC01599Q8WXQ3 324 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 MAP6Q96JE9 813 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 FCRL2Q96LA5 508 aaPredicted RBP7.19□□□□□ -1.26
SCFD1-221ENST00000556534 APBA2Q99767 749 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 MCMBPQ9BTE3 642 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 SP110Q9HB58 689 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 SUGT1Q9Y2Z0 365 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 EMC9Q9Y3B6 208 aa7.19□□□□□ -1.26
SCFD1-221ENST00000556534 SSU72P8A0A1W2PR75 194 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 HPXP02790 462 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 CD3EP07766 207 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 IFNGR1P15260 489 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 ENDOUP21128 410 aaKnown RBP7.18□□□□□ -1.26
SCFD1-221ENST00000556534 ERVFC1P60507 584 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 DUSP4Q13115 394 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 EEPD1Q7L9B9 569 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 ZNF227Q86WZ6 799 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 PDZD8Q8NEN9 1154 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 MRGPRX3Q96LB0 322 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 LGR4Q9BXB1 951 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 AP5S1Q9NUS5 200 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 ERVK13-1Q9NX77 482 aa7.18□□□□□ -1.26
SCFD1-221ENST00000556534 POU4F1Q01851 419 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 MCTP1Q6DN14 999 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 TRIM59Q8IWR1 403 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 BVESQ8NE79 360 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 HHIPL1Q96JK4 782 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 FCRL3Q96P31 734 aaPredicted RBP7.17□□□□□ -1.26
SCFD1-221ENST00000556534 CDADC1Q9BWV3 514 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 EPN3Q9H201 632 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 AKT3Q9Y243 479 aa7.17□□□□□ -1.26
SCFD1-221ENST00000556534 STXBP3O00186 592 aa7.16□□□□□ -1.26
SCFD1-221ENST00000556534 TBX1O43435 398 aa7.16□□□□□ -1.26
SCFD1-221ENST00000556534 USP2O75604 605 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms