RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 CLSTN1O94985 981 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 RECKO95980 971 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 JUNBP17275 347 aaPredicted RBP6.88□□□□□ -1.31
SRP54-211ENST00000556445 TMED8Q6PL24 325 aaPredicted RBP6.88□□□□□ -1.31
SRP54-211ENST00000556445 BAHD1Q8TBE0 780 aaPredicted RBP6.88□□□□□ -1.31
SRP54-211ENST00000556445 EHMT1Q9H9B1 1298 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 METTL5Q9NRN9 209 aaKnown RBP6.88□□□□□ -1.31
SRP54-211ENST00000556445 PCDHB14Q9Y5E9 798 aa6.88□□□□□ -1.31
SRP54-211ENST00000556445 CFAP74Q9C0B2 1584 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 ABCC1P33527 1531 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 DUOX2Q9NRD8 1548 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 RPRD2Q5VT52 1461 aaKnown RBP6.87□□□□□ -1.31
SRP54-211ENST00000556445 ASXL2Q76L83 1435 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 SLC22A31A6NKX4 558 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 SEZ6Q53EL9 994 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 DPH6Q7L8W6 267 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 ATG4DQ86TL0 474 aaPredicted RBP6.87□□□□□ -1.31
SRP54-211ENST00000556445 RNF141Q8WVD5 230 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 UBE2FQ969M7 185 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 EAF1Q96JC9 268 aaPredicted RBP6.87□□□□□ -1.31
SRP54-211ENST00000556445 NT5C1AQ9BXI3 368 aa6.87□□□□□ -1.31
SRP54-211ENST00000556445 CARS2Q9HA77 564 aaKnown RBP6.87□□□□□ -1.31
SRP54-211ENST00000556445 PZPP20742 1482 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 ERBINQ96RT1 1412 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 NUP155O75694 1391 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 LOC102724159A0A0B4J2E5 919 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 CLCQ05315 142 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 APOBRQ0VD83 1088 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 PWP2Q15269 919 aaKnown RBP6.86□□□□□ -1.31
SRP54-211ENST00000556445 KIAA0825Q8IV33 1275 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 DTWD2Q8NBA8 298 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 CCDC74BQ96LY2 380 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 KREMEN1Q96MU8 473 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 KIF2CQ99661 725 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 DUSP15Q9H1R2 295 aaPredicted RBP6.86□□□□□ -1.31
SRP54-211ENST00000556445 ZSWIM5Q9P217 1185 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 RNF114Q9Y508 228 aa6.86□□□□□ -1.31
SRP54-211ENST00000556445 DENND4BO75064 1496 aaPredicted RBP6.85□□□□□ -1.31
SRP54-211ENST00000556445 KRTAP9-6A0A140TA67 174 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 WASH4PA8MWX3 477 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 LRRN2O75325 713 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 SRFP11831 508 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 ZNF394Q53GI3 561 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 ARSHQ5FYA8 562 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 USP48Q86UV5 1035 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 SLITRK4Q8IW52 837 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 REXO1Q8N1G1 1221 aaKnown RBP6.85□□□□□ -1.31
SRP54-211ENST00000556445 FLAD1Q8NFF5 587 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 SPON2Q9BUD6 331 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 GMIPQ9P107 970 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 RIPOR2Q9Y4F9 1068 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 FANCAO15360 1455 aa6.85□□□□□ -1.31
SRP54-211ENST00000556445 SPAG9O60271 1321 aaKnown RBP6.84□□□□□ -1.31
SRP54-211ENST00000556445 UNC13BO14795 1591 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 RGS13O14921 159 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 UBOX5O94941 541 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 ESR1P03372 595 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 CENPBP07199 599 aaPredicted RBP6.84□□□□□ -1.31
SRP54-211ENST00000556445 TNNI2P48788 182 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 MLECQ14165 292 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 GAB4Q2WGN9 574 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 OVOS1Q6IE37 1185 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 NOP9Q86U38 636 aaKnown RBP6.84□□□□□ -1.31
SRP54-211ENST00000556445 PHACTR4Q8IZ21 702 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 MICAL1Q8TDZ2 1067 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 VWCEQ96DN2 955 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 ASIC4Q96FT7 647 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 KRTAP4-12Q9BQ66 201 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 GPR62Q9BZJ7 368 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 PRDM16Q9HAZ2 1276 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 CTNND2Q9UQB3 1225 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 PCDHGB7Q9Y5F8 929 aa6.84□□□□□ -1.31
SRP54-211ENST00000556445 BIN1O00499 593 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 CDCP2Q5VXM1 449 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 GK5Q6ZS86 529 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 ZNF526Q8TF50 670 aaPredicted RBP6.83□□□□□ -1.32
SRP54-211ENST00000556445 NKD1Q969G9 470 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 RNF34Q969K3 372 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 ASPNQ9BXN1 380 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 CNNM2Q9H8M5 875 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 C19orf73Q9NVV2 129 aa6.83□□□□□ -1.32
SRP54-211ENST00000556445 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.83□□□□□ -1.32
SRP54-211ENST00000556445 ARHGEF12Q9NZN5 1544 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 FAM135AQ9P2D6 1515 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 ADGRL1O94910 1474 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 MEIS3P2A8K0S8 358 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 SCAMP3O14828 347 aaKnown RBP6.82□□□□□ -1.32
SRP54-211ENST00000556445 POLR2BP30876 1174 aaKnown RBP6.82□□□□□ -1.32
SRP54-211ENST00000556445 ZNF165P49910 485 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 RACK1P63244 317 aaKnown RBP6.82□□□□□ -1.32
SRP54-211ENST00000556445 TMPRSS7Q7RTY8 843 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 METTL16Q86W50 562 aaKnown RBP6.82□□□□□ -1.32
SRP54-211ENST00000556445 ATG4CQ96DT6 458 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 ANTXR1Q9H6X2 564 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 DDX41Q9UJV9 622 aaKnown RBP6.82□□□□□ -1.32
SRP54-211ENST00000556445 KCNH3Q9ULD8 1083 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 IQGAP3Q86VI3 1631 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 CD109Q6YHK3 1445 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 KANK1Q14678 1352 aa6.82□□□□□ -1.32
SRP54-211ENST00000556445 ZNF518AQ6AHZ1 1483 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms