RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 SPACA3Q8IXA5 215 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 LRRC47Q8N1G4 583 aaKnown RBP8.45□□□□□ -1.06
LINC00643-204ENST00000555934 FANCLQ9NW38 375 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 PIM2Q9P1W9 311 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 FHOD1Q9Y613 1164 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 PTCH2Q9Y6C5 1203 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 HOXA10P31260 410 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 GRIA2P42262 883 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 DPY19L1Q2PZI1 675 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 YOD1Q5VVQ6 348 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 FOXB2Q5VYV0 432 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 CRTC3Q6UUV7 619 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 PIWIL2Q8TC59 973 aaKnown RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 THAP3Q8WTV1 239 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 BTN2A2Q8WVV5 523 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 UBE2FQ969M7 185 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 DUSP15Q9H1R2 295 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 ARHGEF4Q9NR80 690 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 ZC3H7BQ9UGR2 993 aaKnown RBP8.44□□□□□ -1.06
LINC00643-204ENST00000555934 RNF112Q9ULX5 631 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 ST14Q9Y5Y6 855 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 CADPSQ9ULU8 1353 aa8.44□□□□□ -1.06
LINC00643-204ENST00000555934 ADCY3O60266 1144 aa8.43□□□□□ -1.06
LINC00643-204ENST00000555934 L1CAMP32004 1257 aa8.43□□□□□ -1.06
LINC00643-204ENST00000555934 ARHGEF39Q8N4T4 335 aa8.43□□□□□ -1.06
LINC00643-204ENST00000555934 SYTL5Q8TDW5 730 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-204ENST00000555934 ZNF669Q96BR6 464 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-204ENST00000555934 HDAC8Q9BY41 377 aa8.43□□□□□ -1.06
LINC00643-204ENST00000555934 GPR55Q9Y2T6 319 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-204ENST00000555934 EMC9Q9Y3B6 208 aa8.43□□□□□ -1.06
LINC00643-204ENST00000555934 TPP2P29144 1249 aaPredicted RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 CTSKP43235 329 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 HSP90AA2PQ14568 343 aaPredicted RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 TRIM59Q8IWR1 403 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 ZBTB38Q8NAP3 1195 aaPredicted RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 NETO1Q8TDF5 533 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 TCTN2Q96GX1 697 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 SGSM3Q96HU1 749 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 RCC1LQ96I51 464 aaKnown RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 MRGPRX3Q96LB0 322 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 AARSD1Q9BTE6 412 aaKnown RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 GPR62Q9BZJ7 368 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 GPATCH2Q9NW75 528 aa8.42□□□□□ -1.06
LINC00643-204ENST00000555934 DIS3Q9Y2L1 958 aaKnown RBP8.42□□□□□ -1.06
LINC00643-204ENST00000555934 CDC45O75419 566 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 FOSL1P15407 271 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 SF1Q15637 639 aaKnown RBP8.41□□□□□ -1.06
LINC00643-204ENST00000555934 FAM209AQ5JX71 171 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 GTF2IRD2BQ6EKJ0 949 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 GTF2IRD2Q86UP8 949 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 CDC6Q99741 560 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 KRTAP4-12Q9BQ66 201 aa8.41□□□□□ -1.06
LINC00643-204ENST00000555934 TRIT1Q9H3H1 467 aaKnown RBP8.41□□□□□ -1.06
LINC00643-204ENST00000555934 SF3B6Q9Y3B4 125 aaKnown RBP8.41□□□□□ -1.06
LINC00643-204ENST00000555934 A0A087WZG4 1122 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 TRAV20A0A0B4J274 112 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 PRODHO43272 600 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 CD3EP07766 207 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 SRFP11831 508 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 KCNJ6P48051 423 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 IFI16Q16666 785 aaKnown RBP8.4□□□□□ -1.06
LINC00643-204ENST00000555934 CWF19L1Q69YN2 538 aaKnown RBP8.4□□□□□ -1.06
LINC00643-204ENST00000555934 POMZP3Q6PJE2 187 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 ZNF662Q6ZS27 426 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 CRACR2BQ8N4Y2 399 aaPredicted RBP8.4□□□□□ -1.06
LINC00643-204ENST00000555934 APPBP2Q92624 585 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 IER2Q9BTL4 223 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 MKNK2Q9HBH9 465 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 ATP13A1Q9HD20 1204 aa8.4□□□□□ -1.06
LINC00643-204ENST00000555934 STXBP3O00186 592 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 FKTNO75072 461 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 COBLO75128 1261 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 GRIK1P39086 918 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 CD96P40200 585 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 AMPD2Q01433 879 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 C21orf62-AS1Q17RA5 79 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 TSPYL5Q86VY4 417 aaPredicted RBP8.39□□□□□ -1.07
LINC00643-204ENST00000555934 HOMER1Q86YM7 354 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 JMYQ8N9B5 988 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 DAGLBQ8NCG7 672 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 ZSWIM2Q8NEG5 633 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 EXOC2Q96KP1 924 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 MCMBPQ9BTE3 642 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 SEMA3GQ9NS98 782 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 TMEM260Q9NX78 707 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 PRR13Q9NZ81 148 aa8.39□□□□□ -1.07
LINC00643-204ENST00000555934 TMEM265A0A087WTH1 108 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 SSU72P8A0A1W2PR75 194 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 ASMTLO95671 621 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 GSNP06396 782 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 SYPP08247 313 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 CLCN7P51798 805 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 PRSS53Q2L4Q9 553 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 INTS5Q6P9B9 1019 aaKnown RBP8.38□□□□□ -1.07
LINC00643-204ENST00000555934 CREG2Q8IUH2 290 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 ZNF655Q8N720 491 aaPredicted RBP8.38□□□□□ -1.07
LINC00643-204ENST00000555934 ENOX1Q8TC92 643 aaKnown RBP8.38□□□□□ -1.07
LINC00643-204ENST00000555934 FOXP3Q9BZS1 431 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 DUSP13Q9UII6 198 aa8.38□□□□□ -1.07
LINC00643-204ENST00000555934 ENPP3O14638 875 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms