RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 PCSK9Q8NBP7 692 aaKnown RBP11.72□□□□□ -0.53
SCFD1-215ENST00000555259 VTI1AQ96AJ9 217 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 RIOK1Q9BRS2 568 aaKnown RBP11.72□□□□□ -0.53
SCFD1-215ENST00000555259 VCPKMTQ9H867 229 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 TMX2Q9Y320 296 aa11.72□□□□□ -0.53
SCFD1-215ENST00000555259 WDR46O15213 610 aaKnown RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 TLR3O15455 904 aaKnown RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 ANP32CO43423 234 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 SNAI1O95863 264 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 GNAI2P04899 355 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 C6orf222P0C671 652 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 STAT3P40763 770 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 RABGGTBP53611 331 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 OTOP2Q7RTS6 562 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 CLEC10AQ8IUN9 316 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 C11orf16Q9NQ32 467 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 FBXO28Q9NVF7 368 aa11.71□□□□□ -0.53
SCFD1-215ENST00000555259 DBNLQ9UJU6 430 aaKnown RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 ZHX1Q9UKY1 873 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 ZNF214Q9UL59 606 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 COL11A1P12107 1806 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-215ENST00000555259 VWA5AO00534 786 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 ADCY6O43306 1168 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 GPR37L1O60883 481 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 CD4P01730 458 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 MYOGP15173 224 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 ICA1Q05084 483 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 MAMDC4Q6UXC1 1216 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 SH2D4AQ9H788 454 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 ARHGEF10LQ9HCE6 1279 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 MCM9Q9NXL9 1143 aa11.71□□□□□ -0.54
SCFD1-215ENST00000555259 WDFY4Q6ZS81 3184 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 POU3F3P20264 500 aaPredicted RBP11.7□□□□□ -0.54
SCFD1-215ENST00000555259 COPB2P35606 906 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 TMED8Q6PL24 325 aaPredicted RBP11.7□□□□□ -0.54
SCFD1-215ENST00000555259 ALYREFQ86V81 257 aaKnown RBP11.7□□□□□ -0.54
SCFD1-215ENST00000555259 NAV1Q8NEY1 1877 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 REPS2Q8NFH8 660 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 KHSRPQ92945 711 aaKnown RBP eCLIP11.7□□□□□ -0.541e-7■■■□□ 15
SCFD1-215ENST00000555259 UPF3AQ9H1J1 476 aaKnown RBP11.7□□□□□ -0.54
SCFD1-215ENST00000555259 HIPK3Q9H422 1215 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 ANTXR1Q9H6X2 564 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 SPC25Q9HBM1 224 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 TLR7Q9NYK1 1049 aaKnown RBP11.7□□□□□ -0.54
SCFD1-215ENST00000555259 PCDHA11Q9Y5I1 949 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 MTCH2Q9Y6C9 303 aa11.7□□□□□ -0.54
SCFD1-215ENST00000555259 UMODL1Q5DID0 1318 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 FAM86C2PA6NEL3 165 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 TLL1O43897 1013 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 CT47B1P0C2W7 299 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-215ENST00000555259 AKR1B1P15121 316 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 GJA9P57773 515 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 OS9Q13438 667 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-215ENST00000555259 ACVR2BQ13705 512 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 GNASQ5JWF2 1037 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 ARHGAP45Q92619 1136 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 PPP1R9AQ9ULJ8 1098 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 COG5Q9UP83 839 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 SLC4A7Q9Y6M7 1214 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 LRRC37A2A6NM11 1700 aa11.69□□□□□ -0.54
SCFD1-215ENST00000555259 DNAJC25-GNG10A0A024R161 153 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 MAGEB6P1A0A0J9YX57 407 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 RFXAPO00287 272 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 GTPBP6O43824 516 aaPredicted RBP11.68□□□□□ -0.54
SCFD1-215ENST00000555259 CCL23P55773 120 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 CCDC144BQ3MJ40 725 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 TRMT2AQ8IZ69 625 aaKnown RBP11.68□□□□□ -0.54
SCFD1-215ENST00000555259 DDX11Q96FC9 970 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 CRNKL1Q9BZJ0 848 aaKnown RBP11.68□□□□□ -0.54
SCFD1-215ENST00000555259 SWAP70Q9UH65 585 aa11.68□□□□□ -0.54
SCFD1-215ENST00000555259 CTAGE5O15320 804 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 CYP2D6P10635 497 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 POLA2Q14181 598 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 SLC43A3Q8NBI5 491 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 SDR42E1Q8WUS8 393 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 DYNLL2Q96FJ2 89 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 TEX13BQ9BXU2 312 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 CCDC8Q9H0W5 538 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 WNT8AQ9H1J5 351 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 ABHD16BQ9H3Z7 469 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 ZBBXA8MT70 800 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 SURF6O75683 361 aaKnown RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 ATP2A2P16615 1042 aaKnown RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 NKX3-2P78367 333 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 KRT40Q6A162 431 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 RPUSD2Q8IZ73 545 aaKnown RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 EAF2Q96CJ1 260 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 VWCEQ96DN2 955 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 NOC4LQ9BVI4 516 aaKnown RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 CERS4Q9HA82 394 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 DCP1AQ9NPI6 582 aaPredicted RBP11.67□□□□□ -0.54
SCFD1-215ENST00000555259 RIPK3Q9Y572 518 aa11.67□□□□□ -0.54
SCFD1-215ENST00000555259 EPOPA6NHQ4 379 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 PI4K2BG5E9Z4 385 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 CA3P07451 260 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
SCFD1-215ENST00000555259 RARSP54136 660 aaKnown RBP11.66□□□□□ -0.54
SCFD1-215ENST00000555259 BEX3Q00994 111 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms