RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 COL11A1P12107 1806 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L15C9J2P7 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L13C9JLJ4 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 TMEM232C9JQI7 657 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L11C9JVI0 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L18D6R9N7 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L22D6RA61 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L17D6RBQ6 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L19D6RCP7 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L20D6RJB6 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 USP17L24Q0WX57 530 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 FUT2Q10981 343 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 SPRYD7Q5W111 196 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 RGMBQ6NW40 437 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 NBPF11Q86T75 865 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 SRBD1Q8N5C6 995 aaKnown RBP16.78■□□□□ 0.28
SHMT2-210ENST00000553950 CCDC148Q8NFR7 591 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 GTF3C2Q8WUA4 911 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-210ENST00000553950 CCDC12Q8WUD4 166 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-210ENST00000553950 CCDC102AQ96A19 550 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 SLF1Q9BQI6 1058 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 PNMA3Q9UL41 463 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 AGTPBP1Q9UPW5 1226 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 SLC45A1Q9Y2W3 748 aa16.78■□□□□ 0.28
SHMT2-210ENST00000553950 JAK2O60674 1132 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 FLOT1O75955 427 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 ZNF157P51786 506 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-210ENST00000553950 PPP1R18Q6NYC8 613 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 GADL1Q6ZQY3 521 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 RASGRP2Q7LDG7 609 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 RASAL3Q86YV0 1011 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 PRPF38AQ8NAV1 312 aaKnown RBP16.77■□□□□ 0.28
SHMT2-210ENST00000553950 PHKBQ93100 1093 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 NUP88Q99567 741 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-210ENST00000553950 CREBZFQ9NS37 354 aa16.77■□□□□ 0.28
SHMT2-210ENST00000553950 MYH15Q9Y2K3 1946 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 MANSC4A6NHS7 340 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-210ENST00000553950 ZBTB5O15062 677 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 SLC10A3P09131 477 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 SCG2P13521 617 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 PFKFB3Q16875 520 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-210ENST00000553950 TEX2Q8IWB9 1127 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 ADGRF4Q8IZF3 695 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 CNKSR2Q8WXI2 1034 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 DDX11Q96FC9 970 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 ALG1Q9BT22 464 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 ZCCHC17Q9NP64 241 aaKnown RBP16.76■□□□□ 0.27
SHMT2-210ENST00000553950 SH3GLB2Q9NR46 395 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 FOXD4L1Q9NU39 408 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-210ENST00000553950 PPP1R9AQ9ULJ8 1098 aa16.76■□□□□ 0.27
SHMT2-210ENST00000553950 CTDP1Q9Y5B0 961 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-210ENST00000553950 PNMA6FA0A0J9YX94 578 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 H3BQV1 296 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 OSBPP22059 807 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 HOXA7P31268 230 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-210ENST00000553950 SLC4A3P48751 1232 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 APLP1P51693 650 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 IRX3P78415 501 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-210ENST00000553950 NUCB2P80303 420 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 CDC37Q16543 378 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-210ENST00000553950 KIAA1755Q5JYT7 1200 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 IFFO2Q5TF58 517 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 CCDC82Q8N4S0 544 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 MB21D1Q8N884 522 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 SPRYD3Q8NCJ5 442 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 MTMR8Q96EF0 704 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 C8orf76Q96K31 380 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 BRMS1Q9HCU9 246 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 PRR12Q9ULL5 1215 aa16.75■□□□□ 0.27
SHMT2-210ENST00000553950 CYTH3O43739 400 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 GJA5P36382 358 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 INHBEP58166 350 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 SREBF2Q12772 1141 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 COG2Q14746 738 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 LARP1BQ659C4 914 aaKnown RBP16.74■□□□□ 0.27
SHMT2-210ENST00000553950 TTBK2Q6IQ55 1244 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 CATSPERGQ6ZRH7 1159 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 HOMER1Q86YM7 354 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 CMTR1Q8N1G2 835 aaKnown RBP16.74■□□□□ 0.27
SHMT2-210ENST00000553950 KIFC2Q96AC6 838 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 UBA5Q9GZZ9 404 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 GLT8D2Q9H1C3 349 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 RANBP17Q9H2T7 1088 aaKnown RBP16.74■□□□□ 0.27
SHMT2-210ENST00000553950 JMJD4Q9H9V9 463 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 HOXC10Q9NYD6 342 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 V9GY48 417 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-210ENST00000553950 THSD7BQ9C0I4 1608 aa16.74■□□□□ 0.27
SHMT2-210ENST00000553950 WDR33Q9C0J8 1336 aaKnown RBP16.73■□□□□ 0.27
SHMT2-210ENST00000553950 CCL15-CCL14A0A0B4J2E2 113 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 ZBED4O75132 1171 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 CALML3P27482 149 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 SLC16A2P36021 539 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 OAZ1P54368 228 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 SAFBQ15424 915 aaKnown RBP eCLIP16.73■□□□□ 0.27
SHMT2-210ENST00000553950 CCL15Q16663 113 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 GALNT17Q6IS24 598 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 ANKRD23Q86SG2 305 aa16.73■□□□□ 0.27
SHMT2-210ENST00000553950 REM2Q8IYK8 340 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-210ENST00000553950 AMNQ9BXJ7 453 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms