RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PLD2O14939 933 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 CAPNS1P04632 268 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 PABPC4Q13310 644 aaKnown RBP eCLIP7.08□□□□□ -1.283e-10■■■□□ 16.3
SCFD1-209ENST00000553280 CBX2Q14781 532 aaPredicted RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 FAM209AQ5JX71 171 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 NBPF12Q5TAG4 269 aaPredicted RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 TP53INP2Q8IXH6 220 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 NIM1KQ8IY84 436 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 CCDC144CPQ8IYA2 1237 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 ABI1Q8IZP0 508 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 LRRN4CLQ8ND94 238 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 IPO9Q96P70 1041 aaKnown RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 CDC6Q99741 560 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 NCOA5Q9HCD5 579 aaKnown RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 BSDC1Q9NW68 430 aaPredicted RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 LRP2BPQ9P2M1 347 aa7.08□□□□□ -1.28
SCFD1-209ENST00000553280 COL17A1Q9UMD9 1497 aaPredicted RBP7.08□□□□□ -1.28
SCFD1-209ENST00000553280 LEFTY1O75610 366 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 ITGAVP06756 1048 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 PPP2R2AP63151 447 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 CYP27C1Q4G0S4 372 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 FNDC3BQ53EP0 1204 aaKnown RBP7.07□□□□□ -1.28
SCFD1-209ENST00000553280 NFXL1Q6ZNB6 911 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 ARMCX6Q7L4S7 300 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 VSIG10LQ86VR7 867 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 DHX37Q8IY37 1157 aaKnown RBP7.07□□□□□ -1.28
SCFD1-209ENST00000553280 DNAJB8Q8NHS0 232 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 VWCEQ96DN2 955 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 AARSD1Q9BTE6 412 aaKnown RBP7.07□□□□□ -1.28
SCFD1-209ENST00000553280 DDX56Q9NY93 547 aaKnown RBP7.07□□□□□ -1.28
SCFD1-209ENST00000553280 APEX2Q9UBZ4 518 aa7.07□□□□□ -1.28
SCFD1-209ENST00000553280 MRPS23Q9Y3D9 190 aaKnown RBP7.07□□□□□ -1.28
SCFD1-209ENST00000553280 TRBV23-1A0A0A0MS06 115 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 MARCH6O60337 910 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 PPM1BO75688 479 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 PRNPP04156 253 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 FGFR1P11362 822 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 MYCLP1P12525 358 aaPredicted RBP7.06□□□□□ -1.28
SCFD1-209ENST00000553280 CD247P20963 164 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 YOD1Q5VVQ6 348 aaPredicted RBP7.06□□□□□ -1.28
SCFD1-209ENST00000553280 DCAF15Q66K64 600 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 ADAT2Q7Z6V5 191 aaKnown RBP7.06□□□□□ -1.28
SCFD1-209ENST00000553280 ZNF227Q86WZ6 799 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 C7orf61Q8IZ16 206 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 FAM181AQ8N9Y4 354 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 BVESQ8NE79 360 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 FLCNQ8NFG4 579 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 XAGE3Q8WTP9 111 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 STAG1Q8WVM7 1258 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 RCC1LQ96I51 464 aaKnown RBP7.06□□□□□ -1.28
SCFD1-209ENST00000553280 ZNF512BQ96KM6 892 aaPredicted RBP7.06□□□□□ -1.28
SCFD1-209ENST00000553280 FGD4Q96M96 766 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 GBP3Q9H0R5 595 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 ZNF451Q9Y4E5 1061 aa7.06□□□□□ -1.28
SCFD1-209ENST00000553280 DNAJC25-GNG10A0A024R161 153 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 A0A087WZG4 1122 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 A0A087X0B3 334 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 RAPGEF3O95398 923 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 RNF4P78317 190 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 AUHQ13825 339 aaKnown RBP7.05□□□□□ -1.28
SCFD1-209ENST00000553280 THNSL2Q86YJ6 484 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 KRTAP1-3Q8IUG1 177 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 PPP1R14AQ96A00 147 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 FBXL18Q96ME1 805 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 KREMEN1Q96MU8 473 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 MRPL4Q9BYD3 311 aaKnown RBP7.05□□□□□ -1.28
SCFD1-209ENST00000553280 MKRN2Q9H000 416 aaKnown RBP7.05□□□□□ -1.28
SCFD1-209ENST00000553280 TYW1Q9NV66 732 aaKnown RBP7.05□□□□□ -1.28
SCFD1-209ENST00000553280 WHRNQ9P202 907 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 ADGRE2Q9UHX3 823 aa7.05□□□□□ -1.28
SCFD1-209ENST00000553280 NOP56O00567 594 aaKnown RBP7.04□□□□□ -1.28
SCFD1-209ENST00000553280 SHOXO15266 292 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 PABPC1P11940 636 aaKnown RBP7.04□□□□□ -1.28
SCFD1-209ENST00000553280 STAT3P40763 770 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 PLEKHG6Q3KR16 790 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 NSMFQ6X4W1 530 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 ZNF574Q6ZN55 896 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-209ENST00000553280 PLD6Q8N2A8 252 aaKnown RBP7.04□□□□□ -1.28
SCFD1-209ENST00000553280 ARHGEF39Q8N4T4 335 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 TOP6BLQ8N6T0 577 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 CHAC2Q8WUX2 184 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 OSBP2Q969R2 916 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 MRGPRX3Q96LB0 322 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 CLUHP3Q96NS8 147 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 IRF2BPLQ9H1B7 796 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 CAAP1Q9H8G2 361 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 EMC9Q9Y3B6 208 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 U3KQE9 123 aa7.04□□□□□ -1.28
SCFD1-209ENST00000553280 IRS4O14654 1257 aaPredicted RBP7.03□□□□□ -1.28
SCFD1-209ENST00000553280 PRODHO43272 600 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 KCNQ2O43526 872 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 POU3F3P20264 500 aaPredicted RBP7.03□□□□□ -1.28
SCFD1-209ENST00000553280 GRIA2P42262 883 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 SUMO1P63165 101 aaKnown RBP7.03□□□□□ -1.28
SCFD1-209ENST00000553280 BNIP3Q12983 259 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 LETMD1Q6P1Q0 360 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 RIN3Q8TB24 985 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 DUSP23Q9BVJ7 150 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 GP6Q9HCN6 339 aa7.03□□□□□ -1.28
SCFD1-209ENST00000553280 INTS7Q9NVH2 962 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms