RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PDE6AP16499 860 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 SEC24CP53992 1094 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 GUCY1A3Q02108 690 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 TTF1Q15361 905 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PKN1Q16512 942 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 FAM153CQ494X1 144 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 CREG2Q8IUH2 290 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 LRRC15Q8TF66 581 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 NELFBQ8WX92 580 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 SH3GL2Q99962 352 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 FOXP1Q9H334 677 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 GREM2Q9H772 168 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MLXIPQ9HAP2 919 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 JADE2Q9NQC1 790 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 FAM153AQ9UHL3 310 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 SALL4Q9UJQ4 1053 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 JAG2Q9Y219 1238 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 CAPN7Q9Y6W3 813 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 ADAMTS7Q9UKP4 1686 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 EBAG9O00559 213 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 NCK2O43639 380 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 ZEB2O60315 1214 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 CIAO1O76071 339 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PLEKHA8P1O95397 391 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 ZFYP08048 801 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 ERCC3P19447 782 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 EIF5P55010 431 aaKnown RBP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 NPY5RQ15761 445 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 TRIM22Q8IYM9 498 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MAGEB6Q8N7X4 407 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PLIN2Q99541 437 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 UBAC1Q9BSL1 405 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 BTG4Q9NY30 223 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 AATFQ9NY61 560 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 SCN11AQ9UI33 1791 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 GLI3P10071 1580 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 RIC1Q4ADV7 1423 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PP2D1A8MPX8 630 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MBD4O95243 580 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MMP14P50281 582 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PTGDRQ13258 359 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 RTN1Q16799 776 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 FILIP1LQ4L180 1135 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 PDXDC2PQ6P474 469 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 NFRKBQ6P4R8 1299 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 ANKRD18AQ8IVF6 992 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 IFNL3Q8IZI9 196 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 CTCFLQ8NI51 663 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-214ENST00000552783 TMEM87BQ96K49 555 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 GSDMAQ96QA5 445 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 CEP89Q96ST8 783 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MYH7P12883 1935 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 MAP3K15Q6ZN16 1313 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 STK36Q9NRP7 1315 aa5.44□□□□□ -1.54
LIMA1-214ENST00000552783 GSG1L2A8MUP6 293 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 B4DLN1 442 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 BACH1O14867 736 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 EPHB6O15197 1021 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 PARP1P09874 1014 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 IDEP14735 1019 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 INPP5BP32019 993 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 TUBB2AQ13885 445 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC24Q8N4L8 307 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ANKRD13CQ8N6S4 541 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 MB21D1Q8N884 522 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CAGE1Q8TC20 777 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF507Q8TCN5 953 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 MS4A14Q96JA4 679 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CTAGE1Q96RT6 745 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 DNAJC7Q99615 494 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 TUBB2BQ9BVA1 445 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 MYO1AQ9UBC5 1043 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 LRWD1Q9UFC0 647 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 RIPOR2Q9Y4F9 1068 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ARHGAP23Q9P227 1491 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CYP2D7A0A087X1C5 515 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 TRIM75PA6NK02 468 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 SCP2P22307 547 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 MAP2K2P36507 400 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 LIFRP42702 1097 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 MAP3K12Q12852 859 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 PPFIA1Q13136 1202 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 PAK1Q13153 545 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 DZIP3Q86Y13 1208 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 KIRREL3Q8IZU9 778 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CNPY4Q8N129 248 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 PRPF38AQ8NAV1 312 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 FANCBQ8NB91 859 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 PROCA1Q8NCQ7 364 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 OR8K1Q8NGG5 319 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 TTLL11Q8NHH1 800 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC51Q96ER9 411 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 RNPC3Q96LT9 517 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ZIM3Q96PE6 472 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 NACAP1Q9BZK3 213 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 HAUS4Q9H6D7 363 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 V9GY48 417 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 TARSL2A2RTX5 802 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF233A6NK53 670 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms