RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ANKRD36CQ5JPF3 1778 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 MINDY4BA8MYZ0 360 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 N4BP3O15049 544 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PDE8AO60658 829 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 COPB1P53618 953 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PPARAQ07869 468 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PTGDRQ13258 359 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PDXDC2PQ6P474 469 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 IRF2BP1Q8IU81 584 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CNGA4Q8IV77 575 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 C10orf67Q8IYJ2 551 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 IQUBQ8NA54 791 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE1Q96RT6 745 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 RNF26Q9BY78 433 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 LIMA1Q9UHB6 759 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TTF2Q9UNY4 1162 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 COL4A1P02462 1669 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PNPLA7Q6ZV29 1317 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 NHSL1Q5SYE7 1610 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CCDC196A0A1B0GTZ2 297 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ERICH2A1L162 156 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE15A4D2H0 777 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TRIM49BA6NDI0 452 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ENC1O14682 589 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 SEMA3EO15041 775 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 SRGAP2O75044 1071 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE8P0CG41 777 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 KRT9P35527 623 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 KRT2P35908 639 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 SART3Q15020 963 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 RRAGBQ5VZM2 374 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 SRLQ86TD4 932 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE6Q86UF2 777 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE4Q8IX94 777 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 GDAQ9Y2T3 454 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 SOS2Q07890 1332 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ZC3H4Q9UPT8 1303 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TTC26A0AVF1 554 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ERLIN1O75477 346 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CYP19A1P11511 503 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 PMS1P54277 932 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ATP2C1P98194 919 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TROAPQ12815 778 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 FILIP1LQ4L180 1135 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TCP11X2Q5H9J9 407 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TTC38Q5R3I4 469 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 WDR59Q6PJI9 974 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TMTC1Q8IUR5 882 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 TMTC2Q8N394 836 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 NELFBQ8WX92 580 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CCDC51Q96ER9 411 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 NUP88Q99567 741 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 UBAC1Q9BSL1 405 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 MTA3Q9BTC8 594 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CARD10Q9BWT7 1032 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 CWC15Q9P013 229 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 MYO6Q9UM54 1294 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 GUCA1BQ9UMX6 200 aa6.12□□□□□ -1.43
LIMA1-212ENST00000552491 RRP15Q9Y3B9 282 aaKnown RBP6.12□□□□□ -1.43
LIMA1-212ENST00000552491 ITGB4P16144 1822 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PLCH1Q4KWH8 1693 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 DISP2A7MBM2 1401 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 KCNJ18B7U540 433 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ANKRD65E5RJM6 399 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 NKRFO15226 690 aaKnown RBP eCLIP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PRPF3O43395 683 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ZMYND10O75800 440 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 NDUFA10O95299 355 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 STARD3NLO95772 234 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 SYF2O95926 243 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 ATP1A1P05023 1023 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 SLC5A1P13866 664 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PRCPP42785 496 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 RCAN1P53805 252 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 HERVK_113P62684 666 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 KCNJ12Q14500 433 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 WHAMMP3Q1A5X7 153 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 LRRC31Q6UY01 552 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 CYP26C1Q6V0L0 522 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 TRAPPC11Q7Z392 1133 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 SRBD1Q8N5C6 995 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 RIN2Q8WYP3 895 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 FERMT2Q96AC1 680 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 GDAP1L1Q96MZ0 367 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 MMS19Q96T76 1030 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 NACAP1Q9BZK3 213 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PLEKHA4Q9H4M7 779 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 RWDD2AQ9UIY3 292 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 EPN1Q9Y6I3 576 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 MROH5Q6ZUA9 1318 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 RCCD1A6NED2 376 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 NMT2O60551 498 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 EIF3JO75822 258 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 TUBBP07437 444 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 MYBL2P10244 700 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 GNAT2P19087 354 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 CYP7A1P22680 504 aa6.11□□□□□ -1.43
LIMA1-212ENST00000552491 DYNLL1P63167 89 aaKnown RBP6.11□□□□□ -1.43
LIMA1-212ENST00000552491 PAK1Q13153 545 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 190.8 ms