RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 CRNKL1Q9BZJ0 848 aaKnown RBP9.23□□□□□ -0.93
NEK3-201ENST00000550331 EYSQ5T1H1 3165 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 PFASO15067 1338 aa9.23□□□□□ -0.93
NEK3-201ENST00000550331 LAMA2P24043 3122 aaKnown RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 FRMPD3Q5JV73 1810 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 CNMDO75829 334 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 HOXC6P09630 235 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 IFIT2P09913 472 aaKnown RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 MDM2Q00987 491 aaPredicted RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 CACNB2Q08289 660 aaPredicted RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 MAP2K5Q13163 448 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 FAM109BQ6ICB4 259 aaPredicted RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 ACER1Q8TDN7 264 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 EDC3Q96F86 508 aaKnown RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 CHMP4BQ9H444 224 aaKnown RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 CWC22Q9HCG8 908 aaKnown RBP9.22□□□□□ -0.93
NEK3-201ENST00000550331 ZBTB40Q9NUA8 1239 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 MCM9Q9NXL9 1143 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 DDX19BQ9UMR2 479 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 ZNF532Q9HCE3 1301 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 TTC28Q96AY4 2481 aa9.22□□□□□ -0.93
NEK3-201ENST00000550331 TCRBV5S4A2TA0A5A2 114 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 SLC15A5A6NIM6 579 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 GOLIM4O00461 696 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 RAB11FIP3O75154 756 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 COL6A1P12109 1028 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 GUCY1A2P33402 732 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 GRB14Q14449 540 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 CCL14Q16627 93 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 DIEXFQ68CQ4 756 aaKnown RBP9.21□□□□□ -0.94
NEK3-201ENST00000550331 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 TMEM179Q6ZVK1 233 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 DNAJC2Q99543 621 aaKnown RBP9.21□□□□□ -0.94
NEK3-201ENST00000550331 RPAP3Q9H6T3 665 aaPredicted RBP9.21□□□□□ -0.94
NEK3-201ENST00000550331 DCP1AQ9NPI6 582 aaPredicted RBP9.21□□□□□ -0.94
NEK3-201ENST00000550331 PRDM6Q9NQX0 595 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 SWAP70Q9UH65 585 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 DACH1Q9UI36 760 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 IVNS1ABPQ9Y6Y0 642 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 CDK5RAP2Q96SN8 1893 aa9.21□□□□□ -0.94
NEK3-201ENST00000550331 SPDYE16A6NNV3 312 aaPredicted RBP9.2□□□□□ -0.94
NEK3-201ENST00000550331 ATP5JP18859 108 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 CCND3P30281 292 aaPredicted RBP9.2□□□□□ -0.94
NEK3-201ENST00000550331 SEPT2Q15019 361 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 LRRC26Q2I0M4 334 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 LCE2CQ5TA81 110 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 MFSD14CQ5VZR4 134 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 SIRT2Q8IXJ6 389 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 LCORLQ8N3X6 602 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 SDR42E1Q8WUS8 393 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 LPAR1Q92633 364 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.2□□□□□ -0.94
NEK3-201ENST00000550331 ATP8A2Q9NTI2 1148 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 HOXC10Q9NYD6 342 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 BTBD7Q9P203 1132 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 COG6Q9Y2V7 657 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 PRUNE2Q8WUY3 3088 aa9.2□□□□□ -0.94
NEK3-201ENST00000550331 CDH23Q9H251 3354 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 A0A1W2PRG0 241 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 APBB1O00213 710 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 MPHOSPH10O00566 681 aaKnown RBP9.19□□□□□ -0.94
NEK3-201ENST00000550331 MSCO60682 206 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 AVPP01185 164 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 ADD2P35612 726 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 COG2Q14746 738 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 WDR78Q5VTH9 848 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 MB21D1Q8N884 522 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 SHCBP1Q8NEM2 672 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 MAFAQ8NHW3 353 aaPredicted RBP9.19□□□□□ -0.94
NEK3-201ENST00000550331 TATDN2Q93075 761 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 HAUS7Q99871 368 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 LBHD1Q9BQE6 289 aaPredicted RBP9.19□□□□□ -0.94
NEK3-201ENST00000550331 TANGO6Q9C0B7 1094 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 SH2D4AQ9H788 454 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 ARMT1Q9H993 441 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 PAG1Q9NWQ8 432 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 FLRT1Q9NZU1 646 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 DDX20Q9UHI6 824 aaKnown RBP9.19□□□□□ -0.94
NEK3-201ENST00000550331 LTBP2Q14767 1821 aa9.19□□□□□ -0.94
NEK3-201ENST00000550331 DNAH12Q6ZR08 3092 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 TERTO14746 1132 aaKnown RBP9.18□□□□□ -0.94
NEK3-201ENST00000550331 STRNO43815 780 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 MBD4O95243 580 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 IGHA2P01877 340 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 ATP2B2Q01814 1243 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 UBE3CQ15386 1083 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 AMOTL1Q8IY63 956 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 SLC44A5Q8NCS7 719 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 CCDC17Q96LX7 622 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 CDX2Q99626 313 aaPredicted RBP9.18□□□□□ -0.94
NEK3-201ENST00000550331 MOV10L1Q9BXT6 1211 aaKnown RBP9.18□□□□□ -0.94
NEK3-201ENST00000550331 SPATC1LQ9H0A9 340 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 BOLA2Q9H3K6 86 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 ARHGEF10LQ9HCE6 1279 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 TMX2Q9Y320 296 aa9.18□□□□□ -0.94
NEK3-201ENST00000550331 NAV1Q8NEY1 1877 aa9.17□□□□□ -0.94
NEK3-201ENST00000550331 ZNF236Q9UL36 1845 aa9.17□□□□□ -0.94
NEK3-201ENST00000550331 DNM1LO00429 736 aa9.17□□□□□ -0.94
NEK3-201ENST00000550331 AXIN1O15169 862 aa9.17□□□□□ -0.94
NEK3-201ENST00000550331 WDR46O15213 610 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms