RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ZBED4O75132 1171 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 NEK4P51957 841 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 OAZ1P54368 228 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 KIF22Q14807 665 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 FAM110CQ1W6H9 321 aa20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 ZNF274Q96GC6 653 aaPredicted RBP20.41■□□□□ 0.86
CLSTN3-210ENST00000540931 DHX16O60231 1041 aaKnown RBP20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 MCM2P49736 904 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 CRHR2Q13324 411 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 GRM4Q14833 912 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 APOA5Q6Q788 366 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 BRF1Q92994 677 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 P2RX7Q99572 595 aaKnown RBP20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 ADAMTS5Q9UNA0 930 aa20.4■□□□□ 0.86
CLSTN3-210ENST00000540931 CPLX2Q6PUV4 134 aaKnown RBP20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 FANCBQ8NB91 859 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 GPRC5AQ8NFJ5 357 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 NKX2-3Q8TAU0 364 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 NUP133Q8WUM0 1156 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 UPF3BQ9BZI7 483 aaKnown RBP20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 MORF4L1Q9UBU8 362 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 HPS5Q9UPZ3 1129 aa20.39■□□□□ 0.85
CLSTN3-210ENST00000540931 KLF18A0A0U1RQI7 1052 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 PALM3A6NDB9 673 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 SPDYE16A6NNV3 312 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 ATP2A1O14983 1001 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 SLC25A27O95847 323 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 GNRH1P01148 92 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 KIAA1755Q5JYT7 1200 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 C17orf99Q6UX52 265 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 KCTD1Q719H9 257 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 CCAR1Q8IX12 1150 aaKnown RBP20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 MAF1Q9H063 256 aa20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 RBM27Q9P2N5 1060 aaKnown RBP20.38■□□□□ 0.85
CLSTN3-210ENST00000540931 KLRF2D3W0D1 207 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 VWA5AO00534 786 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 CYP2C8P10632 490 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 PKN2Q16513 984 aaKnown RBP20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 SYDE2Q5VT97 1194 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 KIFC2Q96AC6 838 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 ERO1AQ96HE7 468 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 LRRC2Q9BYS8 371 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 MTMR7Q9Y216 660 aa20.37■□□□□ 0.85
CLSTN3-210ENST00000540931 ADGRA2Q96PE1 1338 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 METAP2P50579 478 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 SP3Q02447 781 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 RTN1Q16799 776 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 TKFCQ3LXA3 575 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 PRPF38BQ5VTL8 546 aaKnown RBP20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 SHCBP1Q8NEM2 672 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 ZNF296Q8WUU4 475 aaPredicted RBP20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 ZSCAN31Q96LW9 406 aaPredicted RBP20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 NUP88Q99567 741 aaPredicted RBP20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 SLC38A10Q9HBR0 1119 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 MAD2L2Q9UI95 211 aa20.36■□□□□ 0.85
CLSTN3-210ENST00000540931 NID2Q14112 1375 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 GOLGA8AA7E2F4 631 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 GOLGA8BA8MQT2 603 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 GPR25O00155 361 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 FKTNO75072 461 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 TBC1D8O95759 1140 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 BCRP11274 1271 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 MAPK4P31152 587 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 MICU3Q86XE3 530 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 TCEANC2Q96MN5 208 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 SPZ1Q9BXG8 430 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 TEX13BQ9BXU2 312 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 GPCPD1Q9NPB8 672 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 FBXO40Q9UH90 709 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 PRR12Q9ULL5 1215 aa20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 NAP1L2Q9ULW6 460 aaPredicted RBP20.35■□□□□ 0.85
CLSTN3-210ENST00000540931 FRMPD2Q68DX3 1309 aaPredicted RBP20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 CDKL5O76039 1030 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 CPA1P15085 419 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 HOXD10P28358 340 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 ERVK-9P63128 1117 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 ERVK-24P63145 666 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 APOBRQ0VD83 1088 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 TOB2Q14106 344 aaPredicted RBP20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 ATG4CQ96DT6 458 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 MROH8Q9H579 483 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 RBPJLQ9UBG7 517 aa20.34■□□□□ 0.85
CLSTN3-210ENST00000540931 STRNO43815 780 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 STAT3P40763 770 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 PRMT2P55345 433 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 TEX2Q8IWB9 1127 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 ANKRD13CQ8N6S4 541 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 KIF2CQ99661 725 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 SPATC1LQ9H0A9 340 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 RANBP17Q9H2T7 1088 aaKnown RBP20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 RIOX1Q9H6W3 641 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 SENP2Q9HC62 589 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 SH2B1Q9NRF2 756 aaPredicted RBP20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 SEC63Q9UGP8 760 aaKnown RBP20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 LIMCH1Q9UPQ0 1083 aa20.33■□□□□ 0.85
CLSTN3-210ENST00000540931 hCG_1984214I3L0E3 225 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 CPLX1O14810 134 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 PDIA3P30101 505 aaKnown RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 AK2P54819 239 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 FCGRTP55899 365 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms