RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SLKQ9H2G2 1235 aaPredicted RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 ZCCHC17Q9NP64 241 aaKnown RBP12.28□□□□□ -0.44
VPS33A-204ENST00000540669 AGTPBP1Q9UPW5 1226 aa12.28□□□□□ -0.44
VPS33A-204ENST00000540669 PTPDC1A2A3K4 754 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 KLRF2D3W0D1 207 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 JAK2O60674 1132 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 FMNL1O95466 1100 aaPredicted RBP12.27□□□□□ -0.45
VPS33A-204ENST00000540669 MAP2K2P36507 400 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.45
VPS33A-204ENST00000540669 SLC1A4P43007 532 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 ATP2B2Q01814 1243 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 PKN1Q16512 942 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 TREML2Q5T2D2 321 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 TTBK2Q6IQ55 1244 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 POTEHQ6S545 545 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 CCDC83Q8IWF9 413 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 SPICE1Q8N0Z3 855 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 RANBP17Q9H2T7 1088 aaKnown RBP12.27□□□□□ -0.45
VPS33A-204ENST00000540669 JMJD4Q9H9V9 463 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 PPP1R9AQ9ULJ8 1098 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 MYH15Q9Y2K3 1946 aa12.27□□□□□ -0.45
VPS33A-204ENST00000540669 LRRC37A2A6NM11 1700 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 DHX16O60231 1041 aaKnown RBP12.26□□□□□ -0.45
VPS33A-204ENST00000540669 GOLGA8HP0CJ92 632 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 VEGFBP49765 207 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 STAT2P52630 851 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 GTF2A2P52657 109 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 CCT2P78371 535 aaKnown RBP12.26□□□□□ -0.45
VPS33A-204ENST00000540669 STK3Q13188 491 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 CYP4F22Q6NT55 531 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 SYNE3Q6ZMZ3 975 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 CATSPERGQ6ZRH7 1159 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 KCTD1Q719H9 257 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 ANKRD23Q86SG2 305 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 FAM160B2Q86V87 743 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 CCDC144CPQ8IYA2 1237 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 FAM177A1Q8N128 213 aaPredicted RBP12.26□□□□□ -0.45
VPS33A-204ENST00000540669 NUP133Q8WUM0 1156 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 PTPN18Q99952 460 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 CPVLQ9H3G5 476 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 RPAP3Q9H6T3 665 aaPredicted RBP12.26□□□□□ -0.45
VPS33A-204ENST00000540669 FBXO28Q9NVF7 368 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 FEM1BQ9UK73 627 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 PRR12Q9ULL5 1215 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 ZNF536O15090 1300 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 PCNTO95613 3336 aa12.26□□□□□ -0.45
VPS33A-204ENST00000540669 SPDYE16A6NNV3 312 aaPredicted RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 ATP2A1O14983 1001 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 PRPF3O43395 683 aaKnown RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 CA12O43570 354 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 PPP1R11O60927 126 aaPredicted RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 CDKL5O76039 1030 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 CETPP11597 493 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 HMGN5P82970 282 aaKnown RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 GHRHRQ02643 423 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 BECN1Q14457 450 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 NPY5RQ15761 445 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 ZYXQ15942 572 aaKnown RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 SYDE2Q5VT97 1194 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 FASTKD5Q7L8L6 764 aaKnown RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 DNAJC5GQ8N7S2 189 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 JMYQ8N9B5 988 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 CHMP4CQ96CF2 233 aa12.25□□□□□ -0.45
VPS33A-204ENST00000540669 RBM27Q9P2N5 1060 aaKnown RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 FRMPD2Q68DX3 1309 aaPredicted RBP12.25□□□□□ -0.45
VPS33A-204ENST00000540669 MANSC4A6NHS7 340 aaPredicted RBP12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L15C9J2P7 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L13C9JLJ4 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 TMEM232C9JQI7 657 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L11C9JVI0 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L18D6R9N7 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L22D6RA61 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L17D6RBQ6 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L19D6RCP7 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L20D6RJB6 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 IGF2BP3O00425 579 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS33A-204ENST00000540669 FDX1P10109 184 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 USP17L24Q0WX57 530 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 SREBF2Q12772 1141 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 PFKFB3Q16875 520 aaPredicted RBP12.24□□□□□ -0.45
VPS33A-204ENST00000540669 CCDC96Q2M329 555 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 TYW1BQ6NUM6 668 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 ADGRF4Q8IZF3 695 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 CMTR1Q8N1G2 835 aaKnown RBP12.24□□□□□ -0.45
VPS33A-204ENST00000540669 PHKBQ93100 1093 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 SLF1Q9BQI6 1058 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 SLC38A10Q9HBR0 1119 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 TMOD4Q9NZQ9 345 aa12.24□□□□□ -0.45
VPS33A-204ENST00000540669 ZNF214Q9UL59 606 aaPredicted RBP12.24□□□□□ -0.45
VPS33A-204ENST00000540669 CCL15-CCL14A0A0B4J2E2 113 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 BTBD19C9JJ37 291 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 hCG_1984214I3L0E3 225 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ZBTB5O15062 677 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 DEXIO95424 95 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 SLC16A2P36021 539 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 TM4SF4P48230 202 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 OAZ1P54368 228 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 CCL15Q16663 113 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 PPP1R18Q6NYC8 613 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms