RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ISY1Q9ULR0 285 aaKnown RBP21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 PHIPQ8WWQ0 1821 aa21.99■■□□□ 1.11
TNFRSF1A-213ENST00000540022 PTPDC1A2A3K4 754 aa21.98■■□□□ 1.11
TNFRSF1A-213ENST00000540022 WDR46O15213 610 aaKnown RBP21.98■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TRPA1O75762 1119 aa21.98■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SMARCC2Q8TAQ2 1214 aa21.98■■□□□ 1.11
TNFRSF1A-213ENST00000540022 MS4A4AQ96JQ5 239 aa21.98■■□□□ 1.11
TNFRSF1A-213ENST00000540022 A0A0G2JLL6 359 aaPredicted RBP21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TMEM232C9JQI7 657 aa21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CYTH3O43739 400 aa21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 ZBTB48P10074 688 aaPredicted RBP21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 PRRT2Q7Z6L0 340 aaPredicted RBP21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 LZTS2Q9BRK4 669 aa21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TMOD4Q9NZQ9 345 aa21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CNTNAP5Q8WYK1 1306 aa21.97■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SLC16A2P36021 539 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 TM4SF4P48230 202 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 DDX11Q96FC9 970 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SMC3Q9UQE7 1217 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 CDKL5O76039 1030 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 FDPSP14324 419 aaKnown RBP21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 MOGSQ13724 837 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 SPZ1Q9BXG8 430 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 RPAP3Q9H6T3 665 aaPredicted RBP21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 RIOX1Q9H6W3 641 aa21.96■■□□□ 1.11
TNFRSF1A-213ENST00000540022 FMNL1O95466 1100 aaPredicted RBP21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SMARCA1P28370 1054 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 GJB2P29033 226 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SNAPC2Q13487 334 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 BTNL9Q6UXG8 535 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 BRI3BPQ8WY22 251 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SLC26A6Q9BXS9 759 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FBXO28Q9NVF7 368 aa21.95■■□□□ 1.1
TNFRSF1A-213ENST00000540022 STAT2P52630 851 aa21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SSRP1Q08945 709 aaKnown RBP21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 GADL1Q6ZQY3 521 aa21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 ADGRF4Q8IZF3 695 aa21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PROCA1Q8NCQ7 364 aaPredicted RBP21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PTPN18Q99952 460 aa21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 RNF26Q9BY78 433 aaPredicted RBP21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 VAT1LQ9HCJ6 419 aa21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 ORC3Q9UBD5 711 aaPredicted RBP21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 V9GY48 417 aaPredicted RBP21.94■■□□□ 1.1
TNFRSF1A-213ENST00000540022 hCG_1642624A0A1W2PR95 340 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PLA2G6O60733 806 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 GTF2A2P52657 109 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 HMGN5P82970 282 aaKnown RBP21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 IKQ13123 557 aaPredicted RBP21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 TREML2Q5T2D2 321 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PIBF1Q8WXW3 757 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 TANGO6Q9C0B7 1094 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FEM1BQ9UK73 627 aa21.93■■□□□ 1.1
TNFRSF1A-213ENST00000540022 STK36Q9NRP7 1315 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 CCL15-CCL14A0A0B4J2E2 113 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PRPF3O43395 683 aaKnown RBP21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SREBF2Q12772 1141 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 CCL15Q16663 113 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SYDE2Q5VT97 1194 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 TRIM22Q8IYM9 498 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 CHURC1Q8WUH1 139 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 JMJD4Q9H9V9 463 aa21.92■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PKN1Q16512 942 aa21.91■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FASTKD5Q7L8L6 764 aaKnown RBP21.91■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FAM160B2Q86V87 743 aa21.91■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PIGSQ96S52 555 aa21.91■■□□□ 1.1
TNFRSF1A-213ENST00000540022 PRR12Q9ULL5 1215 aa21.91■■□□□ 1.1
TNFRSF1A-213ENST00000540022 TESPA1A2RU30 521 aaPredicted RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 MANSC4A6NHS7 340 aaPredicted RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L15C9J2P7 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L13C9JLJ4 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L11C9JVI0 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L18D6R9N7 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L22D6RA61 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L17D6RBQ6 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L19D6RCP7 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L20D6RJB6 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 IGF2BP3O00425 579 aaKnown RBP eCLIP21.9■■□□□ 1.12e-6■■■□□ 18.3
TNFRSF1A-213ENST00000540022 CETPP11597 493 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 USP17L24Q0WX57 530 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 GPAT2Q6NUI2 795 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 CATSPERGQ6ZRH7 1159 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 HOMER1Q86YM7 354 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 KIFC2Q96AC6 838 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 MTMR8Q96EF0 704 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 AIFM3Q96NN9 605 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 AGTPBP1Q9UPW5 1226 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FLOT1O75955 427 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 DEXIO95424 95 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 AKAP17AQ02040 695 aaKnown RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SAMD1Q6SPF0 538 aaPredicted RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FAM43AQ8N2R8 423 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 FAM184AQ8NB25 1140 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 RRP36Q96EU6 259 aaKnown RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 SLF1Q9BQI6 1058 aa21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 CWC22Q9HCG8 908 aaKnown RBP21.9■■□□□ 1.1
TNFRSF1A-213ENST00000540022 BTBD19C9JJ37 291 aa21.89■■□□□ 1.09
TNFRSF1A-213ENST00000540022 SNAP25P60880 206 aa21.89■■□□□ 1.09
TNFRSF1A-213ENST00000540022 PRPF38AQ8NAV1 312 aaKnown RBP21.89■■□□□ 1.09
TNFRSF1A-213ENST00000540022 HOXA7P31268 230 aaPredicted RBP21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms