RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 KCNH3Q9ULD8 1083 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 WWC3Q9ULE0 1092 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 SLIT1O75093 1534 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 KDRP35968 1356 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 OPA1O60313 960 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 GUCY2FP51841 1108 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 SLC39A6Q13433 755 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 TSR1Q2NL82 804 aaKnown RBP11.91□□□□□ -0.5
RTN3-208ENST00000537981 RESP18Q5W5W9 173 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 NUTM2AQ8IVF1 878 aaPredicted RBP11.91□□□□□ -0.5
RTN3-208ENST00000537981 OR2W6PQ8NHA6 318 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 ENOX1Q8TC92 643 aaKnown RBP11.91□□□□□ -0.5
RTN3-208ENST00000537981 NUP133Q8WUM0 1156 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 HVCN1Q96D96 273 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 LRRC4CQ9HCJ2 640 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 MYO1AQ9UBC5 1043 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 SERTAD1Q9UHV2 236 aa11.91□□□□□ -0.5
RTN3-208ENST00000537981 CEMIPQ8WUJ3 1361 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 PHF20L1A8MW92 1017 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 HSF2BPO75031 334 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 EXOSC10Q01780 885 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 CCDC122Q5T0U0 273 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 BEND3Q5T5X7 828 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 PAPD7Q5XG87 772 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 CWF19L1Q69YN2 538 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 SLC30A9Q6PML9 568 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 SEC16BQ96JE7 1060 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 NAA15Q9BXJ9 866 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 JADE2Q9NQC1 790 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 ZNF232Q9UNY5 417 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 THRAP3Q9Y2W1 955 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 MAP3K19Q56UN5 1328 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 MACROD2A1Z1Q3 448 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 CARSP49589 748 aaKnown RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 ITGB3BPQ13352 177 aaPredicted RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 KRT32Q14532 448 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 CCDC102BQ68D86 513 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 NUP88Q99567 741 aaPredicted RBP11.9□□□□□ -0.5
RTN3-208ENST00000537981 VPS16Q9H269 839 aa11.9□□□□□ -0.5
RTN3-208ENST00000537981 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.9□□□□□ -0.54e-10■■■■□ 20.1
RTN3-208ENST00000537981 KDM6AO15550 1401 aaPredicted RBP11.9□□□□□ -0.51
RTN3-208ENST00000537981 POLR2DO15514 142 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 NDUFA10O95299 355 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 RXRAP19793 462 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 MCM3P25205 808 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 TMEM62Q0P6H9 643 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 MAP3K12Q12852 859 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 MORC3Q14149 939 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 POSTNQ15063 836 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 TBC1D1Q86TI0 1168 aaPredicted RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 CREG2Q8IUH2 290 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 L3MBTL3Q96JM7 780 aaPredicted RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 OCEL1Q9H607 264 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 ACTR5Q9H9F9 607 aaPredicted RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 SLC5A4Q9NY91 659 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 NFU1Q9UMS0 254 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 PALLDQ8WX93 1383 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 DPPA5A6NC42 116 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 DCDC2CA8MYV0 355 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 PARNO95453 639 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 FESP07332 822 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 PAPOLAP51003 745 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 CWF19L2Q2TBE0 894 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 PPP1R15BQ5SWA1 713 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 HAUS3Q68CZ6 603 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 MSL1Q68DK7 614 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 DDX46Q7L014 1031 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 KIAA1328Q86T90 577 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 NKX2-3Q8TAU0 364 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 CCT6BQ92526 530 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 MAP3K14Q99558 947 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 PAPOLBQ9NRJ5 636 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 CNOT8Q9UFF9 292 aaKnown RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 EPN1Q9Y6I3 576 aaPredicted RBP11.89□□□□□ -0.51
RTN3-208ENST00000537981 MYH1P12882 1939 aa11.89□□□□□ -0.51
RTN3-208ENST00000537981 ZPR1O75312 459 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 IDEP14735 1019 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 ATP4AP20648 1035 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 FECHP22830 423 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 KRT9P35527 623 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 PRPHP41219 470 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 CTCFP49711 727 aaPredicted RBP11.88□□□□□ -0.51
RTN3-208ENST00000537981 CYP27A1Q02318 531 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 HDGFL1Q5TGJ6 251 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 IQCKQ8N0W5 287 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 RBM46Q8TBY0 533 aaKnown RBP11.88□□□□□ -0.51
RTN3-208ENST00000537981 HOMER3Q9NSC5 361 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 GGT7Q9UJ14 662 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 CORO1CQ9ULV4 474 aaPredicted RBP11.88□□□□□ -0.51
RTN3-208ENST00000537981 E7EWF7 191 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 GLI1P08151 1106 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 PDCD2Q16342 344 aaPredicted RBP11.88□□□□□ -0.51
RTN3-208ENST00000537981 CCDC96Q2M329 555 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 ERICH1Q86X53 443 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 CCDC50Q8IVM0 306 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 TRIM58Q8NG06 486 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 COG3Q96JB2 828 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 BATF3Q9NR55 127 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 HPS5Q9UPZ3 1129 aa11.88□□□□□ -0.51
RTN3-208ENST00000537981 ERICH2A1L162 156 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms